BAC Information

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BAC

Clone NameMSMg01-263L03
Chromosome9 (Build37)
Map Location 31,491,454 - 31,491,740
singlet/doubletsinglet
Overlap geneEG666576
Upstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
Downstream geneBarx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263L03.T7 (MSMg01no263_l03.b1)MSMg01-263L03.TJ (MSMg01no263_l03.g1)
ACCAG405447AG405448
length734764
length of high quality
(start - end)
371 (52 - 422)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no263_l03.b1 PHD_FILE: MSMg01no263_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:41 2005CHROMAT_FILE: MSMg01no263_l03.g1 PHD_FILE: MSMg01no263_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACCTGAGGCATACCGAATGGCAGAAAAGCACCTGAAA
AAATGTTCAACATCCTTAATCACCAGGGACATGCAAATCAAAACAACCCT
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACCCCTCCATTGT
TGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTT
CCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCACAATACCTCTCC
TGGGCATATATCCAGAAGATGCCCCAACTGGCAAGAAGAACACATGCTCC
ACTATGTTCATAGCAGCCTTATTCACCCCACCCAGAAGCTGGAAAGAACC
CAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTA
GCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTC
ACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGTCCC
AAACCTAGGATTCCCAAGATATAAGATACAATTTGCTAAACACATGACAC
TCAAGAAGAATGAAGACTGAAGTGTGTACACTAT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAGCAGTGACATAGGGCGTTTGAAG
GCTGTTGGCCTCATCTTCCTCTGCCTCTCACATTCGCAGCTTTATGGGTT
ACTCCTCAAACTCCTTCTCCTCAGCAGTAAAGTGCCCCCCTCCCCTCCGG
CTGTGCCACTCTACTGAGAGGACAAAAGGGACCATGTGGTCAAGGAAACC
TTGAAAGTGCTGGCTGATCCAGAAGATATGGGTGGCCTGCTAGGGAGATG
CCCAAAATTGACTTGCAAGAAGTTAAACCAAGAAGGAAATGAGCCTGCTG
ACCTCTGCAGTCTATTATTAGCCAACGCCCCTGCAAGCAGAAGAGCGGTT
GCTAGGCTCGGGCCCCCCCCAACAACCCAGAGAAAATGATTTGGGAAGAA
GGAACATCTAATCAATCAGCCCTGAGGTACAGCAGCGATGTCTTACAGTG
CTCCTTTGCCTGGTTTCAGGCCACCGAGTCCAAAGTTCTGCCATAGAATC
GGCTCCCCCAAGAGTTCGGTAATTGTTTTCCACCTGTGACTTGCCCAAAC
CCCTGTCATGTTTACAGGGCCCGAGAGCTTCTCTCTTCTGATCCAGCCCA
TAATATAAATAAAGTTGAAAAGTTAAGACCCGGTTTATTATGCCTTAAAT
TCTCTTAAATCATTGTCTTTATATTTTCTTTCATTATTTCTGTGGTACCC
ACAGAACCAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_l03.g1 MSMg01no263_l03.g1 CHROMAT_FILE:
MSMg01no263_l03.g1 PHD_FILE: MSMg01no263_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:41 2005
         (288 letters)



>mm_chr9_31491254_31491942
          Length = 689

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagcagtgacatagggcgtttgaaggctgttggcctcatcttcctctgcctctcacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctagcagtgacatagggcgtttgaaggctgttggcctcatcttcctctgcctctcacatt 428

                                                                       
Query: 61  cgcagctttatgggttactcctcaaactccttctcctcagcagtaaagtg-cccccctcc 119
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 427 cgcagctttatgggttactcctcaaactccttctcctcagcagtaaagtgccccccctcc 368

                                                                       
Query: 120 cctccggctgtgccactctactgagaggacaaaagggaccatgtggtcaaggaaaccttg 179
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cctcctgctgtgccactctactgagaggacaaaagggaccatgtggtcaaggaaaccttg 308

                                                                       
Query: 180 aaagtgctggctgatccagaagatatgggtggcctgctagggagatgcccaaaattgact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aaagtgctggctgatccagaagatatgggtggcctgctagggagatgcccaaaattgact 248

                                                          
Query: 240 tgcaagaagttaaaccaagaaggaaatgagcctgctgacctctgcag 286
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgcaagaagttaaaccaagaaggaaatgagcctgctgacctctgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 689
Length adjustment: 9
Effective length of query: 279
Effective length of database: 680
Effective search space:   189720
Effective search space used:   189720
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)