BAC Information

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BAC

Clone NameMSMg01-265K19
Chromosome9 (Build37)
Map Location 47,131,661 - 47,131,840
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042722, EG667890, 2900052N01Rik, D930036J05
Downstream geneCadm1, LOC100043303, D930028F11Rik, 4432416J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265K19.T7 (MSMg01no265_k19.b1)MSMg01-265K19.TJ (MSMg01no265_k19.g1)
ACCAG406874AG406875
length690760
length of high quality
(start - end)
188 (73 - 260)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no265_k19.b1 PHD_FILE: MSMg01no265_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:14 2005CHROMAT_FILE: MSMg01no265_k19.g1 PHD_FILE: MSMg01no265_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAACCCGTGCCCGACCTTCAAGGAGGTCTGGAAAGGTAAGGTAGCCTCAT
GAGAGGGAAGATTAGACGCCATGCTCCACCTAGCCATGTTCAAGGCACCT
GTGTAAGTTGAATCCCGCTCCTCCATTGGTATGAGTGACAAGTTGCTCTG
TCGCTGTGAGCCTCACTGTCCTTACTATGGGATGGAAACTGATGGTCACA
AATGAGATGCTAGTCTCAAGTCTCAAACTATGCCTGATCCATACTGTCAA
CACAGTGAACTGTATCTTTTTTTGTCCCCTCTAGATGCCTGGTCTTCCCC
CGTCTTGCCTAANTTCCAAAGCAANANCCCAGACTGTATTATGANTTGTG
NTTTTGACCCCCCCCCCCTCAAAAAAGAAAAAATGATGCTTTCCTGGGCC
TGTAAAATGCCCATTACCTTATAGGTGTCTGTCTCATGACAGTGAATTCT
TTTCATGTCGTCTTTCTTCATCTTATTAAGCAAAAGTATTACTTGTATTT
CCATCCTTACTTTTTTTACTCTCTTTTTTTCTCTTTTTTTCAGTCCTACC
CACTTTCACATTCTACTTTTTTCCCTTCACACATACTTTATCATTCCTAC
TATGCAATTATTTATTTTCTCTAACCCTCCTAATCATTTTTTTTCAATCT
TACACATCTATATTTTTTTTCTTTTCTACTCATCTCTCTT
ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACACATTCAGAGAATACTTGGGGGA
TCCTTACAGCGGTGCTTTGAGTGAGAAATGCCCCCGTTGGGCTCACAGGT
TTGAACTCCGTAGTTCCTAGTTAGTACTGTTTGGGGGAGGTGATGGAATG
CCTTGCTGAGGGAAGCACATGGCTGGGTCTGAGCTTTGTGAGTTTCTAGC
CTTGCCTTCATGACTTTCAGTATGGGGGATGCTGATGTGACCTCTCAGCT
CCCTGGTAACCTGTTTGCATGCCTTCCCTGTCATTATGGGCTCTTCCATC
TGGAGTCTGATTTTTTTCCCTCCTCCCCCCTATAAGTTGTTTTTGGTCGT
GGCATTCGATTACCCCACCCCCAAGAAACTGGTACACTATCTGCTCCTTA
CACACGGACATGGAGGGAATCGGGCCCTGAATAAGGAAAAGGACAACGTT
GGGCGGTGGAGGTAATTTTCAGGATACCCTCTAGACTTTCGTATAATATG
AGTACTTAACACGAGAACGGGATTCCTAGTTTCTTATGGTGTATTTCGAA
TTTCTGTATGTTTTTTGTACTACGCTATTCCTTTCCTTTTTCTTGAGTAG
TTTAATTCAATATCATTCGTGTTAGTTTCTGATTAATTATTCTCTAACTC
TTTTTACATTATATTCCCTCCTATTATTTCCTAGTCTATAAACTTATTTT
GGTCTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_k19.b1 MSMg01no265_k19.b1 CHROMAT_FILE:
MSMg01no265_k19.b1 PHD_FILE: MSMg01no265_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:14 2005
         (188 letters)



>mm_chr9_47131461_47132048
          Length = 588

 Score =  317 bits (164), Expect = 2e-91
 Identities = 176/180 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctccacctagccatgttcaaggcacctgtgtaagttgaatcccgctcctccattggtat 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctccacctagccatgttcagggcacctgtgtaagttgaatcccgctcctccattggtat 260

                                                                       
Query: 61  gagtgacaagttgctctgtcgctgtgagcctcactgtccttactatgggatggaaactga 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gagtgacaagttgctctgtcgctgtgagcctcactgtccttacaatgggatggaaactga 320

                                                                       
Query: 121 tggtcacaaatgagatgctagtctcaagtctcaaactatgcctgatccatactgtcaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 321 tggtcacaaatgagatgctagtctcaagtctcaaactatgcctgatatatactgtcaaca 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)