BAC Information

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BAC

Clone NameMSMg01-266I16
Chromosome9 (Build37)
Map Location 22,343,013 - 22,436,665
singlet/doubletdoublet
Overlap geneBbs9
Upstream geneAB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, LOC100040805
Downstream geneBmper
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266I16.T7 (MSMg01no266_i16.b1)MSMg01-266I16.TJ (MSMg01no266_i16.g1)
ACCAG407502AG407503
length794758
length of high quality
(start - end)		321 (46 - 366)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no266_i16.b1 PHD_FILE: MSMg01no266_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:21 2005CHROMAT_FILE: MSMg01no266_i16.g1 PHD_FILE: MSMg01no266_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,436,353 - 22,436,665)(22,343,013 - 22,343,304)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGAGAATGTGGTAGCATGCACTGGGTACTGTGGCAGCATGTAC
TTCTTAAAGGTTTTCCTTGGTTTCCTTTTTAGGAATAAAACTAAACAATG
ATAGTCTAAAAGTACAGAGATATTCAAACATTAACCAAACTGAGATGATA
TAAATAATCAACTTTCACCGAAGTCTGTGGATCCATCCCAAGCTTAAGGA
ATATAATCTACACTAACCACAGAAACCAGACAAATAAAAGGGCATCGGGG
CAGAGGGTGGGTAGGTCCAGAGAGCATGAGGAGAAGCATACAGATGGTGC
CAAGGTGCAGTGTTTATTTACGGGACGCACGCCCCCATTCGGAAGTCAGG
AAGGTAGGCAATGCGGCCCCCCCCTCTGGAACAAAAAAGAATGATAGATG
CTAAGAATGCTTGANAAAGCCATTGTTTTATGTTAACATGAAAATAAATG
TACACTATTTATATATGCGTGCGTTCTTCTACCATTGAGTGTCCCCCCCC
TCCCTATTTATTTCCCTCTATTACCCTCCCTTTTTTATCCCTTCTCCCCC
TCCCCTTTCTTTCTCCTCTCCTTTTTTTTGTTTCTCTCCCTCATGCCTTT
TCGACTCTCTTGCCCCTCTTTTTTAGTCTTTTTTTTCTCCCCTCTCTCTC
GCTTATCCCCCTTTCCCCTTCCTTCCGTCTCTTCTTCTTTTCTCTTCCGC
CCATATACTTCCAGTTCGTACTTCTTCTTCTCTCGTCTTCCTGT

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGCATACTGCTGCTTCATAGC
ATTTTCTGCATGTCAGAAAGAGAACAGCAAGGCTTGCCATAGCTTTCAAT
GATTTTGGTGTTGGGCAGCTGCCATTTCTACTTGTATGGAGCTATTTGTG
AAGCACCATGGACCGGCCTTTGAGAATAGAAGAGATCATTAAAGACTTAC
AGCTTCTTTAGCATTACTATTAGTTACTTAAATTGTATATGCACTCCATA
CTGTGCTCATATTTAACACATATTCTAATTGCATTTTCATACAGAATACT
GTGCATAATTTTAGCATGTCACAGTACCACTACCGTTTAAGCAACAGTAG
CCCACTTGGTATTTTAAAGGAACACTTGCTAGCTGAATGAAGACACTCTT
TGCAGCTTGCGCCGGAGACCACGTTGAATGCTATGAGTGGTTCCATCTGA
CCTGCGGAGAACCACGGTTGGTTATGGTTCCACTTTGTACATGTCCTCCC
AGAGCCAGCTGGCTGCAGTTGGCCTTTTGAAATGGACATTTCTGGCTGAG
CTCTGAAGACTGTATTTTAAAACGTAAAGCATAAAATACCCAGTGTTCAC
TGCTTATACATGAAAGCACATGTCAGAAGAAACAAAATGTACTGAAAAAA
AGACTGTAGGATGCACATTANATTTTGTGTACAGTTACAATTCTGTTTGT
AGTAGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_i16.b1 MSMg01no266_i16.b1 CHROMAT_FILE:
MSMg01no266_i16.b1 PHD_FILE: MSMg01no266_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:21 2005
         (321 letters)



>mm_chr9_22436149_22436869
          Length = 721

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagagaatgtggtagcatgcactgggtactgtggcagcatgtacttcttaaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcacagagaatgtggtagcatgcactgggtactgtggcagcatgtacttcttaaag 458

                                                                       
Query: 65  gttttccttggtttcctttttaggaataaaactaaacaatgatagtctaaaagtacagag 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gttttccttggtttccttcttaggaataaaactaaacaatgatagtctaaaagtacagag 398

                                                                       
Query: 125 atattcaaacattaaccaaactgagatgatataaataatcaactttcaccgaagtctgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atattcaaacattaaccaaactgagatgatataaataatcaactttcaccgaagtctgtg 338

                                                                       
Query: 185 gatccatcccaagcttaaggaatataatctacactaaccacagaaaccagacaaataaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gatccatcccaagcttaaggaatataatctacactaaccacagaaaccagacaaataaaa 278

                                                                       
Query: 245 gggcatcggggcagagggtgggtaggtccagagagcatgaggagaagcatacagatggtg 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 277 gggcatcggggcagagggtgggtaggtccagagagcaggaggagaagcatacagatggtg 218

                        
Query: 305 ccaaggtgcagtg 317
           |||||||||||||
Sbjct: 217 ccaaggtgcagtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no266_i16.g1 MSMg01no266_i16.g1 CHROMAT_FILE:
MSMg01no266_i16.g1 PHD_FILE: MSMg01no266_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:21 2005
         (292 letters)



>mm_chr9_22342813_22343504
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgcatactgctgcttcatagcattttctgcatgtcagaaagagaacagcaaggcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgcatactgctgcttcatagcattttctgcatgtcagaaagagaacagcaaggcttg 260

                                                                       
Query: 61  ccatagctttcaatgattttggtgttgggcagctgccatttctacttgtatggagctatt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ccatagctttcaatgattttggtgttgggcagttgccatttctacttgtatggagctatt 320

                                                                       
Query: 121 tgtgaagcaccatggaccggcctttgagaatagaagagatcattaaagacttacagcttc 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgaagcaccatggaccagcctttgagaatagaagagatcattaaagacttacagcttc 380

                                                                       
Query: 181 tttagcattactattagttacttaaattgtatatgcactccatactgtgctcatatttaa 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttagcattactattagctacttaaattgtatatgcactccatactgtgctcatatttaa 440

                                                               
Query: 241 cacatattctaattgcattttcatacagaatactgtgcataattttagcatg 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacatattctaattgcattttcatacagaatactgtgcataattttagcatg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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