BAC Information

Click to search

BAC

Clone NameMSMg01-266M23
Chromosome9 (Build37)
Map Location 112,308,088 - 112,308,404
singlet/doubletsinglet
Overlap genenone
Upstream geneDclk3, LOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341, LOC620760
Downstream geneLOC100043800, EG622110, LOC100039391, LOC100043801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266M23.T7 (MSMg01no266_m23.b1)MSMg01-266M23.TJ (MSMg01no266_m23.g1)
ACCAG407699AG407700
length750771
length of high quality
(start - end)
321 (46 - 366)65 (78 - 142)
definitionCHROMAT_FILE: MSMg01no266_m23.b1 PHD_FILE: MSMg01no266_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:41 2005CHROMAT_FILE: MSMg01no266_m23.g1 PHD_FILE: MSMg01no266_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTTCAAATGTCATATTTCCTTTTGGATTCTTTCCTGAGTGAAA
ATTTCAGAAACTGGGTTCCTAAGTGCACAAAAAGAATTTCTCTTCAAACC
TTTTTGAAATGACATCAGCTCAAAGACCGACTAGTGGAAATCTTTGCTAC
TTCTGAGCCATAAAAGTGATGTCTTCTAACTCAGAGAATGGCCCATTGAA
AAATGTCATCAGAAAGATAGATGACTGGGATTTTTGGTGGCTCACAATTA
TATCTTGAATATTTCTAAGACACTCAGAAGTTAAATCTGTGGTGACTAAT
GTTAATTCTCAAACTATTCTATCTGGACTCATGCATGAGTTTCTTGGTGA
GAAATGACTTAAGTCTGGTGAGCTTGTGGTCATGTCTGTGGGGGATTGTC
TTCATCGATGTAAGAAGGTCCATCCTGAACCTAGGTGACATTCTTCCTGG
GGTTGGGGCCCTGGACTGTAAAAAAGTGGAGAAATCAAGCTAAGTGCAGG
TAAGCAAGCAAACAAGCACAGCAGCGTGCACCCTTTACTTCTCCTCTTGA
TGGTGGGAGATGTAGTGTGACTAGTGAGTTGTGGGTAATGTCTTGACATC
CCATGACAGTGGATTGATTGTAGCATGAACTTGTAAGCTGAGATAAACCC
CTCCCCCCCTCAAGTTGTTTTGGTCAGGGTATCATCTCATAGCAACAGGA

CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTACTGAAATTACACTTCACGAC
AAACAAGACACAAGCCAAGAACGCCACTAACTTTGTTTTCCCAAAATAAG
TGCTATAATGTCCTGTGAAATTTTGCTCTGGGCTTTTAGAGACTGGCAAT
TTTTGGAAAGGATTAAATTTCCAGTGCGCTCCTTAAAACAAATAAAAATT
AAAGATAAAGAAACTTTGGACGGAATGANNNTTCCTTNNNNNTTCTTTAC
AGGNNNGGCTAAATCAGAATTTTCTAGAAGTTTCAAAGTGCGGAAAAATG
GAGATTCCTGTTCTACCCCCCCCCCCACGGTGGAGGGGGGGAGCGTTTTC
GGACCCCCCTTTGGTTTTTTGAAAAAAAAATTTTTTTTGTGGGGGAAAAA
AAAAACCTTTTAAAAAAAAAGGGCCCGGGGGGATTTCGACAAAGGGGGTA
TTTTTAACCGGGATTTGGGTACCCACCACAGGGGCCAAAAAAAAAAAAAA
ATTTTTTCCCTTTTTATAAAAAAGGCCCCCAAATAAAGGGGGGCGCCCTG
TCGNTTTTTGTTGTTGGGGGAAAAAGGGGGGGGAGGAAAGAAAATTNNNT
TTTTTTTTTAAAAAAAAAGGTTTTTTTATAAAGAAAGTCTCCCCCCCCCC
CCCCTTGCGGTGTCTTTTTTGAAAAAAAAGGGGGGGGAGGAGAAATTTTT
TTCCCTTGATGGAGAAAGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_m23.b1 MSMg01no266_m23.b1 CHROMAT_FILE:
MSMg01no266_m23.b1 PHD_FILE: MSMg01no266_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:41 2005
         (321 letters)



>mm_chr9_112307884_112308604
          Length = 721

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcttcaaatgtcatatttccttttggattctttcctgagtgaaaatttcagaa 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattcatcttcaaatgttatatttccttttggattctttcctgagtgaaaatttcagaa 462

                                                                       
Query: 65  actgggttcctaagtgcacaaaaagaatttctcttcaaacctttttgaaatgacatcagc 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 actgggttcctaagtgtacaaaaagaatttctcttcaaacctttttgaaatgacatcagc 402

                                                                       
Query: 125 tcaaagaccgactagtggaaatctttgctacttctgagccataaaagtgatgtcttctaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tcaaagaccgactagtggaaatctttgctacttctgagccataaaagtgatgtcttctaa 342

                                                                       
Query: 185 ctcagagaatggcccattgaaaaatgtcatcagaaagatagatgactgggatttttggtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctcagagaatggcccattgaaaaatgtcatcagaaagatagatgactgggatttttggtg 282

                                                                       
Query: 245 gctcacaattatatcttgaatatttctaagacactcagaagttaaatctgtggtgactaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gctcacaattatatcttgaatatttctaagacactcagaagttaaatctgtggtgactaa 222

                            
Query: 305 tgttaattctcaaacta 321
           |||||||||||||||||
Sbjct: 221 tgttaattctcaaacta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)