BAC Information

Click to search

BAC

Clone NameMSMg01-268G02
Chromosome9 (Build37)
Map Location 62,418,215 - 62,418,415
singlet/doubletsinglet
Overlap genenone
Upstream geneRplp1, Kif23, Paqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b
Downstream geneItga11, EG665478, Fem1b, Cln6, Calml4, Pias1, LOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268G02.T7 (MSMg01no268_g02.b1)MSMg01-268G02.TJ (MSMg01no268_g02.g1)
ACCAG408828AG408829
length729728
length of high quality
(start - end)
53 (137 - 189)205 (159 - 363)
definitionCHROMAT_FILE: MSMg01no268_g02.b1 PHD_FILE: MSMg01no268_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:39 2005CHROMAT_FILE: MSMg01no268_g02.g1 PHD_FILE: MSMg01no268_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACGCATCTTCACCAGCCGACAGGGCATGATGTCAGGGAAGGAGAC
CTGTAAGGCATAAAGGTATTATTCCATAATACTAGCTAGGAAGCGCCAAG
GGGCATCACAGGTCTCTACGAGATAAAAGGAGCCAGCAGGCTTGGGGTGT
AGCTCAGTTGGTAGGATGCTTGTCCACCATGAAGCCCAGGGAGGGGATCT
CCAGCAGGACATTCGTCAGGTGTGATGACTCATACGGACGACCTCTTCAC
TAGGAGGATCAGTAGAAGGATCAGTAACCCAAAGTCCTCTTCAGCTACCG
TCTGAGCTCTTTTTTATCCTGTCCTCCCCCCCCTCTCGCGCCTGTCTTTG
AGGAGGATAAAAGTACTGGGTCCATCATTAACATCTGGACGAGCCGGTCC
GGACGATCACTCTGCGCGTTCTTAAGACTGTCTCCTCGTTTGGCTGTCTC
AAGGGGGCGTTTGCTCGGTGCAATGGTGTGTCCCCTTGGATAGTGGGGAT
CATCTCATCCAGGGCTAGTTCTGTTACCGAGGATTCTAACGTGCCCTTCG
GCCCCCTCTCTCCTTCAGTCAAGGTCACGCCCATAGCTCAGCACGCTCTC
GTCAAAACGTTATCCAGGCCACTAGCCGCCGAACGGGACCTGGTGTTGAT
GCTTGAATGATGTCCTTGTATCCCCACCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAGTTTTGACCCAGACCACCTTT
CCTCATGTCTTGCTCCATTGCTGGGGGATCCCCCTGTAACCCTGAAATCA
GCAACCAGTGGTATTTCTGAGACTGGATTTTTCTATGCTAAAATGAGAAT
TTTGATAGTAATTTTTAATGTCACTCATTATAATGACAATCCAACTATAA
GTTTTCTGGGGGAATTAAATGACAAGAAACTAATAGTAAGCACAAAATAT
TCTAAATATTTATATTTATTATTAATCTTTCATAGGTGGAAAAGACCACT
GCTCTCTCTGTTCATTGNGTTGCCNAACTATGCCCGCACTCCTGGAATGT
GTAAGAAGTTGAGGGAGGGAGGGAAGAAAAATAAAATTGGAGGAATGGCG
TTTTTTAATTTTTAATTTTTATGGTGTGGAAGTTTGGCCTATATGTGCAT
CAAATGCATGCCTGGTGCTTGTGGAGACCAGAAAAGGGCTTTACATTTTC
TAGAACTGGAGAAACAGACCTTTGTGAATTCACATGGCTGCTGGGAATCA
CACCTGGGTCCTTTGGAAGAGCAGTCATTGCTTTCAACTGCTGAGAAATC
TTTTTCACCCAGAGAGGTATGCCTTGAACTCGACGGACAGTCGGTTTCCA
CTGGCAGCCCAGCTTGAGGACCTGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_g02.g1 MSMg01no268_g02.g1 CHROMAT_FILE:
MSMg01no268_g02.g1 PHD_FILE: MSMg01no268_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:39 2005
         (205 letters)



>mm_chr9_62418082_62418685
          Length = 604

 Score =  352 bits (182), Expect = e-102
 Identities = 197/202 (97%), Gaps = 1/202 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtatttctgagactggatttttctatgctaaaatgagaattttgatagtaatttttaa 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 334 tggtatttctgagactgga-ttttctatgctaaaatgagaattttgatagtaattattaa 276

                                                                       
Query: 61  tgtcactcattataatgacaatccaactataagttttctgggggaattaaatgacaagaa 120
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 275 tgtcactcattataatgacaatccaaccataagttttctgggggaatgaaatgacaagaa 216

                                                                       
Query: 121 actaatagtaagcacaaaatattctaaatatttatatttattattaatctttcataggtg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 actaataataagcacaaaatattctaaatatttatatttattattaatctttcataggtg 156

                                 
Query: 181 gaaaagaccactgctctctctg 202
           ||||||||||||||||||||||
Sbjct: 155 gaaaagaccactgctctctctg 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 604
Length adjustment: 8
Effective length of query: 197
Effective length of database: 596
Effective search space:   117412
Effective search space used:   117412
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)