BAC Information

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BAC

Clone NameMSMg01-268G21
Chromosome9 (Build37)
Map Location 9,233,960 - 9,234,269
singlet/doubletsinglet
Overlap gene9030420J04Rik
Upstream gene1700128F08Rik, Trpc6, Pgr
Downstream geneCntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268G21.T7 (MSMg01no268_g21.b1)MSMg01-268G21.TJ (MSMg01no268_g21.g1)
ACCAG408859AG408860
length726731
length of high quality
(start - end)
331 (46 - 376)295 (77 - 371)
definitionCHROMAT_FILE: MSMg01no268_g21.b1 PHD_FILE: MSMg01no268_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:42 2005CHROMAT_FILE: MSMg01no268_g21.g1 PHD_FILE: MSMg01no268_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTAGATCAGGTTGGCCTTGAGAACTCAGAAATCCGCCTGC
CTCTGCCTCCCAAGTGTGCCACCACTGCCCGGCTGTTTGTTTTTAATGTG
GGTCTAGGGCTGAAACTTTAGTCTTCATGCTTACATGGTAAGCACTTTAA
TGAGCAAGTCATCTCTTCAACCCAACTTTCGTCAACTAAAATCCATCAAC
CAGTAATCCAAACACATGTAGACCTCTACATGTATGAAGTGGTATTTGAT
AATGTTCTTTGCTGTGTATACAGTCAGAAAAAAAGCAAAAACCGAAAAAT
CTAACTCTGTCTATTTTTTTTTTCTTCACCCTCCCCTTAGTCTCTGTTCT
ATGGCTGTGAAGAGACACTGCGACCAACACAACTCTTATAAGCGAAAACA
TCTAATTGGAGGCTTGCTGATGATATCAGAGGTTTAGTCTATGGTGGGAA
GGATGGAGGCATAGTGCTGGAGCAGTACCTGAGAGCTTTAAATCCTGATC
TGCAGGTATCAGACAGACAGACAGACAGACAGACAGACACACACACCCTG
AGAGAGAGACAGATGGAGAGACAAAGAGAGACAGAGATAGANCAGTGACA
GACACTGGGCCTGGTATTGGCTTGTGTATCCTCTGAGCCCACTCCTTATT
GAACACCTCCTCCAACAAGCCCATAG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGGTGGACTCCAGAAAATCA
AATAACCCCATTAAAAATGGGGCTCAGAGCTAAACAAAGAATTCTCACCT
GAGGAATACTGAATGGCTGAGAAGCATCTGAAAAAATGTTCAACATCATT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGA
GGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCT
TGTACAACCACTCTGGAAATCAGACTGGTGGTTCCTCAGAAAATTGGACA
CAGTACTACCAGAGGATCCCGCAATTCCTCTCCTGGGCATATATCCTGAA
GATGTTCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAACCAGAAGGTGGAAAGAACCCAGGTGCCCCTCAACAG
AGGAATGGATATAGAAAATGTGGTACATTTATACAACGGAGTACTACTCA
GCTATTAAAAAGAAAGAATTTATGAAATTCCTAGGCAAATGGATGGACCT
GGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCACACA
ATATGTACTCACTGATAAGTGGATATTAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_g21.b1 MSMg01no268_g21.b1 CHROMAT_FILE:
MSMg01no268_g21.b1 PHD_FILE: MSMg01no268_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:42 2005
         (331 letters)



>mm_chr9_9233580_9234310
          Length = 731

 Score =  507 bits (262), Expect = e-148
 Identities = 299/312 (95%), Gaps = 2/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtagatcaggttggccttgagaactcagaaatccgcctgcctctgcct 63
           |||| |||||||||||| |||||||||||   ||||||||||||| ||||||||||||||
Sbjct: 690 ggaactcactctgtagaccaggttggcct--cgaactcagaaatctgcctgcctctgcct 633

                                                                       
Query: 64  cccaagtgtgccaccactgcccggctgtttgtttttaatgtgggtctagggctgaaactt 123
           |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 632 cccaagtgtgccaccactgcccagctttttgtttttaatgtgggtctagggctgaaactt 573

                                                                       
Query: 124 tagtcttcatgcttacatggtaagcactttaatgagcaagtcatctcttcaacccaactt 183
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 572 tggtcttcatgcttacatggtaagcactttaatgagcaagtcatctcttcaacccagctt 513

                                                                       
Query: 184 tcgtcaactaaaatccatcaaccagtaatccaaacacatgtagacctctacatgtatgaa 243
           |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 512 tcgtcaactaaaattcatcaaccagtaacccaaacacatgtagacctctacatgtatgaa 453

                                                                       
Query: 244 gtggtatttgataatgttctttgctgtgtatacagtcagaaaaaaagcaaaaaccgaaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gtggtatttgataatgttctttgctgtgtatacagtcagaaaaaaagcaaaaaccgaaaa 393

                       
Query: 304 atctaactctgt 315
           ||| ||||||||
Sbjct: 392 atcaaactctgt 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)