TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGTATACTTAGAGAACCTGTTGTATTCTTTCAGTGGGCAGAAT
GTCCTGTTTATGTGCTGTTTTCTTCTTACAATGTGATTGTTGCTGCATGT
CAACCTAGTGGCCTTTAGCTCATTCATGATTGTCTATAACCCTTCTTATA
AGAGACTTCCCAATCACCTTGGTGGTCAGCTAATCACTGGAGAGGAAATT
CTTGACACGTCTTGGGCAAATATGTCTCCCTGTCTCTGCTCAGAGGCTCT
CCGAGTACTGTTGGTCATGTCTTCAACACTCCTGTAGGAAACATTCAGTC
CTAATCCTCCCTTATTTCCTGGTTATACAGCGCCTCTGAACTGTCTGCCT
ATGAGAGGTTTCAGGTTTCTTGGGTGTTTCCTGAGCATGGCGTAGTCTTT
GGGATCTTCAGCAATACATAGAACTTTTCAAATTTGTCTGTAGCCAATCT
TTTCTTTTCAACTAAGTGTTTCAGTCTGTAATTGCAATGCTGCTTTAACT
GTCCCTTCTGTTAAATAATTTAAGATTTTATTATTAATCAGATTTCTGTC
ACTGAATCCAAAATTCCAAGTCTGATCAAGCTAAAAAGATGAGTGGTTTC
TTTTGTCTCACAACTTGGGAAATTTCAGTTAATGACCAAAGGTCATTGCG
TTTAGCCTGTGATGTACAAAGTGTCCTAGTGGAAACCT

ACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCCCCAGGACTCATAAAACTCT
CAGCATGGTCGATATTTCTTATGCTCTCAGTGTGCGAGCACACACACACA
CACACACACACACACACACACACACACACATACACATGCACACACACGCA
CATAAAATTTTAATGTCATGGGCAAATCTGTTATTTTATATACCAATTAA
AAATAAAATAAATAAATATTAAAAAACAAAGATGCTTTTTTGTGAAAAGT
TGGGTAAAAGACACACTGGTTTCTCTCTACTTTTTCATACAACTAAATAT
GGGTCTACAGTTGTCTCTTTTTAAAACAGACCCACCACCCAAAGAAAACT
TGAGTGTGACCCAAAGAAACAAAGAGAAAATAAATGTCTATTGTTGTACA
TTATATACTTAGAAGCACAATTTGTTACCATAGTAAAGAAGGAAGTAAAG
ACATTTATGTGCCTAATGCTTGACAAACTCCATTCTGGGTTTGTAGCTGA
CATAAATACCCAGGAAGTGTGGTAGGACGCAAGTTTCCTTGCTGAAACTG
TAAGTCAGAATGGTGACCACCTTTGGAGTAAGGAATAGGCAGGTAGATAG
GTAGACAGATAGATGGATAGATAGATAGATAGATAGATAGATAGATAGAT
AGATAGATAGATAGATAGATAGATAGATNGAAAGANNNNNNNN

Query= MSMg01no268_j18.b1 MSMg01no268_j18.b1 CHROMAT_FILE:
MSMg01no268_j18.b1 PHD_FILE: MSMg01no268_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:55 2005
         (659 letters)



>mm_chr9_23127118_23128176
          Length = 1059

 Score = 1162 bits (601), Expect = 0.0
 Identities = 641/655 (97%), Gaps = 2/655 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgtatacttagagaacctgttgtattctttcagtgggcagaatgtcctgttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgtatacttagagaacctgttgtattctttcagtgggcagaatgtcctgttt 264

                                                                       
Query: 65  atgtgctgttttcttcttacaatgtgattgttgctgcatgtcaacctagtggcctttagc 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 atgtgctgttttctttttacaatgtgattgttgctgcatgtcaacctagtggcctttggc 324

                                                                       
Query: 125 tcattcatgattgtctataacccttcttataagagacttcccaatcaccttggtggtcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcattcatgattgtctataacccttcttataagagacttcccaatcaccttggtggtcag 384

                                                                       
Query: 185 ctaatcactggagaggaaattcttgacacgtcttgggcaaatatgtctccctgtctctgc 244
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 385 ctaatcactggagaggaaattcttgacacgtcttgggcaaat--gtctccctgtctctgc 442

                                                                       
Query: 245 tcagaggctctccgagtactgttggtcatgtcttcaacactcctgtaggaaacattcagt 304
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcagaggctctctgagtactgttggtcatgtcttcaacactcctgtaggaaacattcagt 502

                                                                       
Query: 305 cctaatcctcccttatttcctggttatacagcgcctctgaactgtctgcctatgagaggt 364
           ||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 503 cctaatcctcccttagttcctggttatacagtgcctctgaactgtctgcctgtgagaggt 562

                                                                       
Query: 365 ttcaggtttcttgggtgtttcctgagcatggcgtagtctttgggatcttcagcaatacat 424
           |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 563 ttcaggtttcttgggtgtttcctgggcgtggcgtagtctttgggatcttcagcaatacat 622

                                                                       
Query: 425 agaacttttcaaatttgtctgtagccaatcttttcttttcaactaagtgtttcagtctgt 484
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 623 agaacttttcaaatttgtctgtagtcaatcttttcttttcaactaagtgtttcagtctgt 682

                                                                       
Query: 485 aattgcaatgctgctttaactgtcccttctgttaaataatttaagattttattattaatc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aattgcaatgctgctttaactgtcccttctgttaaataatttaagattttattattaatc 742

                                                                       
Query: 545 agatttctgtcactgaatccaaaattccaagtctgatcaagctaaaaagatgagtggttt 604
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 743 agatttctgtcactgaatccaaaactccaagtctgatcaagctaaaaagatgagtggttt 802

                                                                  
Query: 605 cttttgtctcacaacttgggaaatttcagttaatgaccaaaggtcattgcgttta 659
           |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 803 cttttgtctcacaacttgggaaatttcagttaatgaccaatggtcattacgttta 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)