BAC Information

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BAC

Clone NameMSMg01-268O18
Chromosome9 (Build37)
Map Location 57,055,769 - 57,056,045
singlet/doubletsinglet
Overlap genenone
Upstream geneC230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik
Downstream geneTrcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268O18.T7 (MSMg01no268_o18.b1)MSMg01-268O18.TJ (MSMg01no268_o18.g1)
ACCAG409196AG409197
length734750
length of high quality
(start - end)
314 (46 - 359)277 (77 - 353)
definitionCHROMAT_FILE: MSMg01no268_o18.b1 PHD_FILE: MSMg01no268_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:17 2005CHROMAT_FILE: MSMg01no268_o18.g1 PHD_FILE: MSMg01no268_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCAAATTAATAAAAAAATCAGATTTGACAGGAGGAGACCTACT
GAAGATCCTGACTACAATCATGAAAGAAATCAAGAACAACAAAACAGGTA
AAGTATATGTAGATCCCTCTTCATGAGAACAGCTCTGAGACTGGCTGAAA
CATGAAAATGTCTGCAGCCAGGACATCAGCTCAACATAGCAAATACATCT
TGTTGGCCATGGAATCCTCTGGGCTTATCATGCTGACTTTTCAAATGGCA
TGGATAAAAATTTATATTACATTTTGGTTATACAGTCCAAACTAAGTTAT
AAAAGAAAGATTTTCTGCTTTACCCCCTCCGAGACCAGAGTCATCTTTAG
CTGATTGTGCACATTGCACACCCCATACATAAGAATAACATATAAATATA
TATTGCCTTTGAATGGTTATATGATTACAAACACCAATGAAGTTAAGCAG
CCCTGATTCACGTTGAGGATGCTAAGAAGGATGCTGACATGCTGAGACAT
ATTTATTCCAGCATCCTGCTTCATCAACCTCAGACTTACCTCATTAGCTG
TTTCATCAAAACTTGTGTCCAGGACAGATGCAAAGCTGTTATCCCCAGGT
GGTCCAGCCTCTCAGACTGTTAAAGTCAGGACTTCATTTTGGCTCTGCTC
TTTCTCAGCACACAGAGACCAGACCATAAATGTN
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGTTTTATCTGTTGTAGCTAC
ACCATCTTGATTGAATGGTTTAGTTACGTTTGGAGCAGCACTGTCTGTCA
TAGTAGGTTTTAATTTTTCCAGTCGCTTTCTCAGTCTCTCCTTGGCTGAT
AGGGAACAAATGGCTCTTGTTTTTTGTTGGGGCCCAAGCAAAGCCCCTTA
GACAGTTTTCTGACCGTAAGGAATTGCCTCTAATATCTCTGGATGAACTA
CATTCATAAGCGTTGTGTGCCCATCTTCTGCATCTTTTACATATTCCAGG
GTTAACATTTTTTAATANNNTGTCCANTATCAAATNGCCGAGTACACTGT
CTGCAGGNACATCAGAAGAGGGCATCAGATACAAATAACAATGGTTGTGG
GGGGGGGTGGGTTTGCTGTTATTTGATCTCNTGACCTCTGGATACAGCAG
TTAATGCTCTTAACCTCTGTGCTATCTCTCCATTCCACTATGGACCTTCT
TTACTAGAAAATGTATCTTTGTTTGCTCATTTCACTTTATTAATTTGTTC
TTGTTTTTCTCCTGTCTATCGCCTTGGATCACCTGTATACTTCCGATCTG
CTGGGCTTTTTTCTTTTCCCCTTAAAACTACCCCTTCTCACCATTACGAC
TTTATCTACGAACCTACTTTAATAACTATCTTTTAATACCTACTTTAGCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_o18.g1 MSMg01no268_o18.g1 CHROMAT_FILE:
MSMg01no268_o18.g1 PHD_FILE: MSMg01no268_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:17 2005
         (277 letters)



>mm_chr9_57055569_57056245
          Length = 677

 Score =  520 bits (269), Expect = e-152
 Identities = 275/277 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgttttatctgttgtagctacaccatcttgattgaatggtttagttacgtttggagc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tcttgttttatctgttgtagctacaccatcttgattgaatggtttagttaagtttggagc 260

                                                                       
Query: 61  agcactgtctgtcatagtaggttttaatttttccagtcgctttctcagtctctccttggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcactgtctgtcatagtaggttttaatttttccagtcgctttctcagtctctccttggc 320

                                                                       
Query: 121 tgatagggaacaaatggctcttgttttttgttggggcccaagcaaagccccttagacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatagggaacaaatggctcttgttttttgttggggcccaagcaaagccccttagacagt 380

                                                                       
Query: 181 tttctgaccgtaaggaattgcctctaatatctctggatgaactacattcataagcgttgt 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctgaccataaggaattgcctctaatatctctggatgaactacattcataagcgttgt 440

                                                
Query: 241 gtgcccatcttctgcatcttttacatattccagggtt 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcccatcttctgcatcttttacatattccagggtt 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)