BAC Information

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BAC

Clone NameMSMg01-269H11
Chromosome9 (Build37)
Map Location 62,901,575 - 62,901,898
singlet/doubletsinglet
Overlap geneLOC100039976
Upstream geneGlce, Spesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4, Pias1
Downstream genePpia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009, Smad6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269H11.T7 (MSMg01no269_h11.b1)MSMg01-269H11.TJ (MSMg01no269_h11.g1)
ACCAG409573AG409574
length723724
length of high quality
(start - end)
328 (44 - 371)286 (74 - 359)
definitionCHROMAT_FILE: MSMg01no269_h11.b1 PHD_FILE: MSMg01no269_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:56 2005CHROMAT_FILE: MSMg01no269_h11.g1 PHD_FILE: MSMg01no269_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATAAATCAAAGCATCACATGGCTAGACTAAGGTAGCCACTTAGACCC
TTGCCCCATCCCAGTCTCTGTGAACTTCCCTCCAGTGGGAACAGCCATTC
TGGAACCCTGGAGTTTGGCTCTGCGTTTCACTAACAAACAGTGACTTTTT
AATGTATGTACTGACCACAAAAAGGGAAAAAAACTATGACAGAGGTGAAA
CTAGAAAAATAATGAACTTTCTATTCCTTTCCATGGCTCAGGTGTCCTCT
TGTCTGCACACAGCACCTCTTGTTGCTATTTCTTTCTAACTGTTGTGATT
CCTGCTTACTGTTGCTTACACACGCACTGTCCATTATAGGCCAGGATCTG
GATATGAGGAGGAAGTTGATTTTTTTTTCCCGATTTTGTGTGACTTTGCT
TAATAGTACAATTCTAAGTTCATCCTTTTTCCTGTAAATTTTGTTTTTCT
TTACACTTGAATAATATTCCATTTTGCACATGAGGAGACACTTCCTTGAT
ATTCACTTGTCTACTGATGGGCATCTAGGGTCGCCTCAGTTTCTGGCTAT
TATAAATAGAGCAGCAATAAACTCGGGTATGCAGGTGTTCCTGTGGTAGA
GTATGGAGTTCTTTGTGTCCATGCCCAGGAAAGTATAGCTGGGTCATACA
TGGTAGTTCTCTTTTTTATTGTN
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACATAGAGAAA
CCCTGTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCAAAA
AACCCTTCCAAAAAAGCAGGGAGACTGTTTTCAAAGCTTGCTAAAAAGCT
GTAGTTATTGAAAATGTGGCCAACAAAAGTGTCCAGAAATAGGTTTATAT
ACTTATGATCAATCAGCTTTTGATAAAAAGCCAAAAGAAATTAAATGAAG
GAAAAAATACTCCTTTTAAAGCAACATTGTTGAAACAGTTGGATAACAAG
GAGGCAGGAAATGAATGCTCTCCCNNCCANCACCAACTATGCCCTACAAA
CTGGGGTCAGTCCTCTGGACTGTGAACTAAAAAGCTGAGTCCTACTTCAT
GAACACAGTTATAGCTAGCTATATATAAAAGTCATCTTGCTATTGAGTCC
CTGTTCTTATGAGCTACCAGTGTTAGTCATGAGACTCTACTAAATAAACT
GAAACAGATAATTTGAAACTCAGTGCTTTAGTTACTTTAGTCACATTAAT
GTTCACTAGCCACGCTGCTGCTGGTGACATCACACAGCTGTCCAGCTGTT
TCAAACTACTGTACTCGATGGTGCTGTTCTGGGTTATAACTGTTTGACTT
CTCTCCCTCATAAATTTCAGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_h11.b1 MSMg01no269_h11.b1 CHROMAT_FILE:
MSMg01no269_h11.b1 PHD_FILE: MSMg01no269_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:56 2005
         (328 letters)



>mm_chr9_62901371_62902098
          Length = 728

 Score =  596 bits (308), Expect = e-175
 Identities = 320/324 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataaatcaaagcatcacatggctagactaaggtagccacttagacccttgcccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaattcataaatcaaagcatcacatggctagactaaggtagccacttagacccttgcccc 469

                                                                       
Query: 65  atcccagtctctgtgaacttccctccagtgggaacagccattctggaaccctggagtttg 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 468 atcccagtctctgtgaacttccctcctgtgggaacagccattctggaaccctggagtttg 409

                                                                       
Query: 125 gctctgcgtttcactaacaaacagtgactttttaatgtatgtactgaccacaaaaaggga 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gctctgggtttcactaacaaacagtgactttttaatgtatgtactgaccacaaaaaggga 349

                                                                       
Query: 185 aaaaaactatgacagaggtgaaactagaaaaataatgaactttctattcctttccatggc 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aaaaaactacgacagaggtgaaactagaaaaataatgaactttctattcctttccatggc 289

                                                                       
Query: 245 tcaggtgtcctcttgtctgcacacagcacctcttgttgctatttctttctaactgttgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tcaggtgtcctcttgtctgcacacagcacctcttgttgctatttctttctaactgttgtg 229

                                   
Query: 305 attcctgcttactgttgcttacac 328
           |||||||||||| |||||||||||
Sbjct: 228 attcctgcttacagttgcttacac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)