Query= MSMg01no270_m07.b1 MSMg01no270_m07.b1 CHROMAT_FILE:
MSMg01no270_m07.b1 PHD_FILE: MSMg01no270_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:30 2005
(318 letters)
>mm_chr9_36904576_36905294
Length = 719
Score = 530 bits (274), Expect = e-155
Identities = 301/316 (95%), Gaps = 11/316 (3%)
Strand = Plus / Minus
Query: 4 ggaattctctgggtggggagtgaaatccccctgtgttgggtatgggggcgagagagcatg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ggaattctctgggtggggagtgaaatccccctgtgttgggtatgggggcgagagagcatg 571
Query: 64 gagttatagatgagtcccaaagacagccccagtctgagatgggaagacaggaaagattcc 123
|||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 570 gagttatagatgagccccaaagacagccccagtctgagatgggaagacagg--------- 520
Query: 124 tattggagacaggggcacctttctgtcacctgggcagtcacctctggagaatcaccagct 183
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 -attggagacaggggcatctttctgtcacctgggcagtcacctctggagaatcaccagct 461
Query: 184 gtggca-ttttttccccagtcattccagaactggtcttgaccacaccccatttctctacc 242
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gtggcatttttttccccagtcattccagaactggtcttgaccacaccccatttctctacc 401
Query: 243 cacagagacagtgttcctgcagaggggatgttcctccaaagtttgttctgctggactctg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 400 cacagagacagtgttcctgcagaggggatgttcctccaaagtttgttctgctggattctg 341
Query: 303 caccactgaaggctct 318
|||||||||||||||
Sbjct: 340 taccactgaaggctct 325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space: 219390
Effective search space used: 219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_m07.g1 MSMg01no270_m07.g1 CHROMAT_FILE:
MSMg01no270_m07.g1 PHD_FILE: MSMg01no270_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:31 2005
(669 letters)
>mm_chr9_36756333_36757396
Length = 1064
Score = 1168 bits (604), Expect = 0.0
Identities = 651/669 (97%), Gaps = 5/669 (0%)
Strand = Plus / Plus
Query: 1 accttggtttgttgagtgacagttggacttagcatgagatttcaggcggtgggacacacc 60
|||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 201 accttggtttgttgagtgacagttggacttagtatgagatctcagggggtgggacacacc 260
Query: 61 agtgttgaggctctctgctgaatagttcatgggaactgggggactggtttaagtcttcgg 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgttgaggctctctgctgagtagttcatgggaactgggggactggtttaagtcttcgg 320
Query: 121 tgtgcagtatgcaaaaaaacaccaagaaaacaaagagtgggggaaagggtttaaagcagg 180
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tgtgcagtatgc-aaaaaacaccaagaaaac----agtgggggaaagggtttaaagcagg 375
Query: 181 gcttctggaattgccataaaggagttctctcactggtaagccggcaaaggctcctgaacc 240
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct: 376 gcttctggaattgccataaaggagttctctcactggtaagccagcaaaggttcctggacc 435
Query: 241 agggcggatgctgagagtgggcttgcgcaagcagagagaaacagtatttattagaatccc 300
||||||||||||||||||| |||||||||||||||||||||||||| | | |||||||||
Sbjct: 436 agggcggatgctgagagtgagcttgcgcaagcagagagaaacagtactgagtagaatccc 495
Query: 301 caaagcagaaaactcttggccttggcattcaggtgtggagcaccatggcgcttacacacg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 caaagcagaaaactcttggccttggcattcaggtgtggagcaccatggcgcttacacacg 555
Query: 361 tatccagctcttactccaccctcagcactttctgaagtatttaagtcattaaagagagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tatccagctcttactccaccctcagcactttctgaagtatttaagtcattaaagagagaa 615
Query: 421 catttcaagttaagatcccagagttagacccgaagggacagaccggggagaggatgagca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 catttcaagttaagatcccagagttagacccgaagggacagaccggggagaggatgagca 675
Query: 481 aggccattgaaagctaatgaatctgcacacaggatcatctccctccctctatcagcaata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aggccattgaaagctaatgaatctgcacacaggatcatctccctccctctatcagcaata 735
Query: 541 gagactgtgtgcctgtgacatggatcttcgaatttggattgtactgagtcctttctgtgt 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 736 gagactgtgtgcctgtgacatggatcttcgaatttggattgtactgagtcctgtctgtgt 795
Query: 601 atttctttccaattcttcagtagcagntttgagtgggtcatggaaggtacatttacaaaa 660
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 796 atttctttccaattcttcagtagcagttttgagtgggtcatggaaggtacatttacaaaa 855
Query: 661 cagaaattg 669
|||||||||
Sbjct: 856 cagaaattg 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1064
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1054
Effective search space: 694586
Effective search space used: 694586
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
