BAC Information

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BAC

Clone NameMSMg01-271E04
Chromosome9 (Build37)
Map Location 53,304,638 - 53,304,943
singlet/doubletsinglet
Overlap geneAtm
Upstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik
Downstream geneNpat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271E04.T7 (MSMg01no271_e04.b1)MSMg01-271E04.TJ (MSMg01no271_e04.g1)
ACCAG410866AG410867
length713743
length of high quality
(start - end)
316 (53 - 368)299 (70 - 368)
definitionCHROMAT_FILE: MSMg01no271_e04.b1 PHD_FILE: MSMg01no271_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:06 2005CHROMAT_FILE: MSMg01no271_e04.g1 PHD_FILE: MSMg01no271_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTAAAATCAAAAAGACAAACCCAAAACACACCAAAAA
ATGTTGTGTGTGTGGTGATGTGTGTCTCTGGCCTTGCTATTCAAAGACTA
AGCTAAATTTGGACTGTAGAATGATTACAACTAGTTAAAAAATACAGATA
GGGGCTGGAGAAATGGCTCTTAGTTAAGAGCACTGACTGTTCTCCCAGAG
GACCAGAGTTTGATTCCCAGCACCTACATGGCAGCTTACAACTGCCTGTA
ACTCCAGTTCCTGGGGGTCTTGTGGCTTTTTCTGATCTCTGCAGGCACTA
TACATAGACTTACATGTATGTAAATCGCCCACACACCTAAAAATAAATTT
TAAAAATGTAAATGGTTCTCTGTTGGGGACTTTTGAAAACTAATTGATCA
TTGAAATGAAAGCATGCCCTTCTTTTTGCAAGACTTTGTTTCTTTTTATA
GTATAGATGGTGATAATCTTTACAGAAGAAAACACTATAAAGATGTATCA
GTAATAAAAATCCTCCTAGCAGTAGCAGCTATAGTGAAAGAACTCTTGAT
ACTTCTTGTTCTCATTTGCTGTTTGCCCTTTAAACTATTCAACACCTTGT
TAAAATCTCTTTTCCTTTGGTAATTCTTTCCACTAGATCTTAAGAAATGG
CAGCTTTTTTATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTTGATATGCACTCACTGATAAGTGGATAT
TAGCCCAGAAACAGACTACCCAAGATATAATTTGCAAAACACATGAAACT
CAAGAAGAAAGAAGACCAAAGTGTGGATACTTCGTTCCTCTTTGGAATGG
GGAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAG
ATGGAAGGAAGGGCCATCCAGAGACTGCCCACCTGGGGATCCATCCTATA
ATCAGCCACCAAACGCAGACATTATTGCATATGCCAGCAGGATTTTGCTG
ACAGTTCCTATTTCTTAAGTGGCTGCCACATATTCTGTGGCTTTCTTCTC
CCAAACGCTGCGAATATATAAAAACTGCCCAGGATATAAAAACTGTGTAG
ATTCGGGGGTGATTTTAACTTGTTAGCTGGATTGTAATGTTTGTACTTGA
GCTCGCACTTAAGTTGTGCCTTTTCCTGGGGTGATATGGACGAAATCTGT
TCAGCCTAACTAAAGCATCAGCAGCAGATCAAATAAATGATTCCAGCAGG
GTCAAGCTTCCTAGACCGGTGAGTTAGCAGGACTAGGGATGAGGAGTTAG
CTACAGAGTGTGGATTACTGAAGGCAGCTGCACCACTGAAAAGCCCACAC
CAGGATAGGTGATCCTCAGGACCCCCCTGAATGGCTTGTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_e04.b1 MSMg01no271_e04.b1 CHROMAT_FILE:
MSMg01no271_e04.b1 PHD_FILE: MSMg01no271_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:06 2005
         (316 letters)



>mm_chr9_53304596_53305311
          Length = 716

 Score =  553 bits (286), Expect = e-162
 Identities = 301/306 (98%)
 Strand = Plus / Minus

                                                                       
Query: 9   tctttaaaatcaaaaagacaaacccaaaacacaccaaaaaatgttgtgtgtgtggtgatg 68
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 348 tctttaaaatcaaaaagacaaacccaaaacacaacaaaaaatgttgtgtgtgtggtgatg 289

                                                                       
Query: 69  tgtgtctctggccttgctattcaaagactaagctaaatttggactgtagaatgattacaa 128
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tatgtctctggccttgctattcaaagactaagctaaatttggactgtagaatgattacaa 229

                                                                       
Query: 129 ctagttaaaaaatacagataggggctggagaaatggctcttagttaagagcactgactgt 188
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ctagttaaaaaatgcagataggggctggagaaatggctcttagttaagagcactgactgt 169

                                                                       
Query: 189 tctcccagaggaccagagtttgattcccagcacctacatggcagcttacaactgcctgta 248
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 168 tctcccagaggaccagagtttgattcccagcacccacatggcagcttacaactacctgta 109

                                                                       
Query: 249 actccagttcctgggggtcttgtggctttttctgatctctgcaggcactatacatagact 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 actccagttcctgggggtcttgtggctttttctgatctctgcaggcactatacatagact 49

                 
Query: 309 tacatg 314
           ||||||
Sbjct: 48  tacatg 43


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)