Query= MSMg01no271_m19.b1 MSMg01no271_m19.b1 CHROMAT_FILE:
MSMg01no271_m19.b1 PHD_FILE: MSMg01no271_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:45 2005
(316 letters)
>mm_chr9_119486751_119487466
Length = 716
Score = 557 bits (288), Expect = e-163
Identities = 306/312 (98%), Gaps = 2/312 (0%)
Strand = Plus / Minus
Query: 5 gaattctctgccctccttgctttgacctggt-cagactcgcgcacccggacaggagagag 63
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 515 gaattctctgccctccttgctttgacct-gtacagactcgcgcacccggacaggagagag 457
Query: 64 aggaggtcctggacctctgcggtatttgatcgtctttggaggtgccctgagaggaagtga 123
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aggaggtcccggacctctgcggtatttgatcgtctttggaggtgccctgagaggaagtga 397
Query: 124 aggtgcctagctttgtctgagtattggtggggacagtgacatggtggggactggcagcct 183
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 396 aggtgcctagctttgtctgagtattggtggggacagtgacatggtggggactagcagcct 337
Query: 184 tggtgctcatgatgcgaggaaatgctcaggatgcggcctggctgtaggcaggccttccaa 243
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tggtgctcatgatgggaggaaatgctcaggatgcggcctggctgtaggcaggccttccaa 277
Query: 244 acacctgttggagggcagcttacaacgatcagccatggaactcactcttgtctccgtagc 303
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 276 acacctgttggagggcagcttacaaagatcagccatggaactcactcttgtctccgtagc 217
Query: 304 gacttcagtcta 315
||||||||||||
Sbjct: 216 gacttcagtcta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_m19.g1 MSMg01no271_m19.g1 CHROMAT_FILE:
MSMg01no271_m19.g1 PHD_FILE: MSMg01no271_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:45 2005
(656 letters)
>mm_chr9_119300749_119301804
Length = 1056
Score = 1143 bits (591), Expect = 0.0
Identities = 642/665 (96%), Gaps = 12/665 (1%)
Strand = Plus / Plus
Query: 1 ttccggcccagacaccctgctgcctccccagtggcactagtccttgtgcttggtctgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ttccggcccagacaccctgctgcctccccagtggcactagtccttgtgcttggtctgaac 252
Query: 61 agctcggctgtgctctgtggagcgctcctgccctgtcctggaccatcttgaagccatgac 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 253 agctcggctgtgctctgtggagcgctcctgccctgtcctggaccatcctgaagccatgac 312
Query: 121 tccttggagacacgtgggctacatgtcctgggatggaaaagcaatttctccttttctgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tccttggagacacgtgggctacatgtcctgggatggaaaagcaatttctccttttctgtc 372
Query: 181 tttcattcaggaaaacactgtagggtatggccaccaaagacagccatgttcccctttcaa 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 373 tttcattcaagaaaacactgtagggtatggccaccaaagacagccatgttccccttttaa 432
Query: 241 agggaccaaacagcagaacaaagggaccaaacagccttttctctgattctgtaccactcc 300
|||||||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||
Sbjct: 433 agggaccaaacagcagaacaaagggaccaaacagcc-tttccctgactctg-accactcc 490
Query: 301 tccttcct----------cacctcccctatcctggaaccgccccctccatccataaacca 350
|||||||| |||||||||||| ||| |||| |||||||||||| |||||||
Sbjct: 491 tccttcctcaccttcagccacctcccctattctgcaacctccccctccatccttaaacca 550
Query: 351 gactaaagcacttctctcctgcctgtgaccctcctgtttctgtaggtgtcttcccagggc 410
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 551 gactaaagcacttctctcctgcctgtgaccctcctgtttctgtaagtgtcttcccggggc 610
Query: 411 tctcttctctctgcctatctcctccttcatcttccctccctatatgtacctggtgtaact 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tctcttctctctgcctatctcctccttcatcttccctccctatatgtacctggtgtaact 670
Query: 471 tcccactcaagacgaccttcattggcctggtgaatctccttcctcccctccccctgctct 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tcccactcaagacgaccttcattggcctggtgaatctccttcctcccctccccctgctct 730
Query: 531 gccatagagacttcctgactgggtttcctgggtgacatctcctaggctaagcacttccca 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gccatagagacttcctgactgggtttcctgggtgacatctcctaggctaagcacttccca 790
Query: 591 gttcacacaatgacataattgtgtgtttcgtgaagtttctaaattctggctttctttttc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gttcacacaatgacataattgtgtgtttcgtgaagtttctaaattctggctttctttttc 850
Query: 651 ttttg 655
|||||
Sbjct: 851 ttttg 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
