BAC Information

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BAC

Clone NameMSMg01-271P10
Chromosome9 (Build37)
Map Location 72,058,742 - 72,059,046
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970
Downstream geneSuhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271P10.T7 (MSMg01no271_p10.b1)MSMg01-271P10.TJ (MSMg01no271_p10.g1)
ACCAG411373AG411374
length739749
length of high quality
(start - end)
313 (46 - 358)194 (122 - 315)
definitionCHROMAT_FILE: MSMg01no271_p10.b1 PHD_FILE: MSMg01no271_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:58 2005CHROMAT_FILE: MSMg01no271_p10.g1 PHD_FILE: MSMg01no271_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGCCCTGCTCACTCTGGCCCAAAGATTTTATTTATTATTATATG
TAAGTACATTGTAGCTGTCTTCAGACACACCAGAAGAGGATGTCAGATCT
CATTACAGATGTTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAG
GACTTTCAGAAGAGCAGTCAATGCTCTTAACTGCTGAGCCATCTCTCCAG
CCCTTAAACACATTTCTTGACAACCCGGGCTTTATATAATACTTGGTCAG
AAAGGTGTTTCTTACTCTAAGACAATATAAAAAGATTTGCTATGTTTTTA
TCAAAAAATTTTGTATGTGCGCCGCGCCATACAAAGCCACCACAATATAA
ATGGCCATTTATTACTTAGATGCTTACTGAAGGGCACATATTCTTGGATT
CCCTAAGATACTGGAGAGCCACAGACCAACATCATCTCTGTGGGGCCTCC
TCATGAAAACCTGTTTTTCTTCTCTAGATTCCATTACCTCAACCATTTGA
ACCACGTTTCATTTCCTCCTCCTCTTCTTCATCCTCCCTTTCCTCCTCTT
CCTCCTCCTCCTCTTATTTCTAACTTCATTCTTTTTTTAATAAAAAATGA
ATTTACGTAGAAGCATTCAAAATGTCAACAAAACAGCTGCAATTTTTTTT
CCAATTACAGAGTTCAGTTAACAGAACAACAATTATCTC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGCATGTGCCATCATGCCTAGCATGCTAT
TTTTTATTAATTAATTCTCTGGTAAGTGTATTGTTACTTTTCTGTTGCTG
TGACAAAACACTATGAAAAAATGAAACTTATAGGAAGGTTTGTTTGAGCT
TAGGGTTCCAGAGGGACCAGAGTCCAATATGGTGGTGCAGTAGGTAAGCA
GGCTGGAATTTCAATCTGAGCTCACATCTTGAACACTAAGCAGGAAGCTG
ACAGAGCAAATGGATTTTTTTACACTCTCAAAGCCACCCTGTGGTGACAT
AAATTCNCCTTAATTCTGNAGCANTGCTAAGAACCAAGTAAGTGTTCAAA
TGACTGAGACTAGAGGTGAAAAAAATAAACACACAGTTACGATCAAACCA
ACTTAAGGCCTTGTTTCTAAAAACAATAGTTTGGATTTAATGAAAGCAGC
TGGCCTTTTTGTCCTTGTAAAAACATTTAATAAGAACAATCACAGCTAAG
TATGGTAGGCATGCCCCTAAGCCCAGCACTTGGGAGGCAGAAGCAGTTTT
TGAGATTGTGGCTGGCTTGATCTATATATTGAGTTCCAGGTGAGCCCCNT
ATCCTTTTTTTTTTCTTTCACATAGAGAGAGAGAGAGAGAGAGAGATAGA
GAGAGACTCGACNCCAGAAACCCTTCTGGAATTACTTGATGGACAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_p10.b1 MSMg01no271_p10.b1 CHROMAT_FILE:
MSMg01no271_p10.b1 PHD_FILE: MSMg01no271_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:58 2005
         (313 letters)



>mm_chr9_72058334_72059046
          Length = 713

 Score =  582 bits (301), Expect = e-171
 Identities = 304/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcaggccctgctcactctggcccaaagattttatttattattatatgtaagtacattgta 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tcaggccctgctcactctggcccaaagattttatttattattatatgtaagtacattgta 654

                                                                       
Query: 69  gctgtcttcagacacaccagaagaggatgtcagatctcattacagatgtttgtgagccac 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gctgtcttcagacacaccagaagaggatgtcagatctcattacagatgtttgtgagccac 594

                                                                       
Query: 129 catgtggttgctgggatttgaactcaggactttcagaagagcagtcaatgctcttaactg 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 catgtggttgctgggatttgaactcaggactttcagaagagcagtcaatgctcttaactg 534

                                                                       
Query: 189 ctgagccatctctccagcccttaaacacatttcttgacaacccgggctttatataatact 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 533 ctgagccatctctccagcccttaaacacatttcttgacaacccgggctttatataatacc 474

                                                                       
Query: 249 tggtcagaaaggtgtttcttactctaagacaatataaaaagatttgctatgtttttatca 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tggtcagaaaggtgtttcttactctaagacaatataaaaagatttgctatgtttttatca 414

                
Query: 309 aaaaa 313
           |||||
Sbjct: 413 aaaaa 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)