BAC Information

Click to search

BAC

Clone NameMSMg01-272I06
Chromosome9 (Build37)
Map Location 82,891,239 - 82,891,527
singlet/doubletsinglet
Overlap genenone
Upstream gene4930486G11Rik, LOC100039085, Irak1bp1, Phip
Downstream geneLOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272I06.T7 (MSMg01no272_i06.b1)MSMg01-272I06.TJ (MSMg01no272_i06.g1)
ACCAG411776AG411777
length745746
length of high quality
(start - end)
320 (45 - 364)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no272_i06.b1 PHD_FILE: MSMg01no272_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:41 2005CHROMAT_FILE: MSMg01no272_i06.g1 PHD_FILE: MSMg01no272_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTACATGGCTTAGAGACTGGTTTTGTACTGTTATGGTGAAGAAT
GGCTGCTTTTTGCCCTTGTCTGAACAGTATACCTGAGGCTAAGGTGAAGA
GATTTAGATTAATTGCTTTGAAAAAGGAAGTTTCAAAAAAGCCCAACAGC
GACTTTGTTCTCTGGTTAAATCTCACGAAGAGCATTTTGAACAAGCATAG
CAAGCTTAGAAAAGGAAAAGTATTAAATATATGGTTCAAATATTAAAGGA
GCACCAGGAAGTGAAGTGGAGCTGAATTCTGTATTCACAGATATTAAATT
AAATTAAGGGAGTGTTGTTCTTGCCCCCCCGCTCCCTCCCAGCTAAGTTT
AGGTCCAGGTATGGTAGTACAATCCTTTAATCCCAGAAGGCAAAGGCGAG
CAGATTCTTGAGTTCAAGGCCAGCCTTGAACAGAGCAGGTTCTAGGTGAA
AAAAGCTTAAGTCCAGGCATGGTGGTCCATGACTTTAATCCAAGCATTAC
AGGAGTCAGAGCTATGCACATCTTGGAGTTCAAAGATCAATCTACAGAGC
AAGTTCCAGGACAGCCAAGCTTAGGCAGTGAGGGAGTGGACTAATTGAAA
GCTGGTAATAAACAATGTCGTGATGTCCCAGTTCCACCATCCTTCCCATC
TTGACAGCCTTTGCCCTTGTTTCTTTGTTCTTTGACACTTGATGG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTGCTGTCTGAAATAAATAAA
GTGTGTAAAGTATTGCTTTTCAAGAAACTGGATATCAGGTTGGACTTGGT
AGCTCATGTCTGCAATTGCAACACTTGGGAGAACCAGGGCAGAAGCTAGC
CTGCCTGGGCTACCTAGTGAGTGAGAAGCTATCTCAAAAGAGAAAAGAAG
AAAGCAGAAAGACAGCAGGCAATGAATGACCAGGACTTACAAGACCAAAT
CCAAATGAGATGAACAGCAACATTGTGTTAATTTGTGACCCAGAAACTAT
TTCCAGACTGTGTCACTTTTTTTATCACCNNACATGCCCACTGGTGTCTC
CTTGAGTAAAGGCTAATGGGGGATCCAGGGAATGAGATAAAGTCTGCAGA
ACATGAAACTGTATAAAAAGAGGTTGTCTACATATAATTATAAAACTCTT
TTAGGCAAAAAAAATTATTTAAATTTCATATATCTGTTAAATAGACTAAA
TTTTTAATTAAATTTTTGCATGGAGAAAATAGAGTCTAGATGGCTGTGTT
AAGTGAACTCTGTCCAAACATTCCAAGAAGATAAAAAAATAATCATCATT
TAGTCAGACAATTAAAAAGAAACACACAGCTCCCAACTCTTGCTGAGATG
CTAGTTTCACTGAGATGTAACAACCAGTCCAATACTGCACAGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_i06.g1 MSMg01no272_i06.g1 CHROMAT_FILE:
MSMg01no272_i06.g1 PHD_FILE: MSMg01no272_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:41 2005
         (289 letters)



>mm_chr9_82890869_82891557
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctgctgtctgaaataaataaagtgtgtaaagtattgcttttcaagaaactggatatc 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 659 tctctgctgtctgaaataaataaagtgtgcaaagtattgcttttcaagaaactggatatc 600

                                                                       
Query: 61  aggttggacttggtagctcatgtctgcaattgcaacacttgggagaaccagggcagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 599 aggttggacttggtagctcatgtctgcaattgcaacacttgggagaaccaggggagaggc 540

                                                                       
Query: 121 tagcctgcctgggctacctagtgagtgagaagctatctcaaaagagaaaagaagaaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tagcctgcctgggctacctagtgagtgagaagctatctcaaaagagaaaagaagaaagca 480

                                                                       
Query: 181 gaaagacagcaggcaatgaatgaccaggacttacaagaccaaatccaaatgagatgaaca 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 479 gaaagacagcaggcaatgaatgaccacgacttacaagaccaaatccaaatgagatgaaca 420

                                                            
Query: 241 gcaacattgtgttaatttgtgacccagaaactatttccagactgtgtca 289
           ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 419 gcaacattgtgttaagttgtgacccagaaactatttccagactgtgtca 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)