BAC Information

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BAC

Clone NameMSMg01-272O12
Chromosome9 (Build37)
Map Location 12,954,809 - 12,955,114
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622505, LOC100039680, LOC665285
Downstream geneLOC100039729, LOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272O12.T7 (MSMg01no272_o12.b1)MSMg01-272O12.TJ (MSMg01no272_o12.g1)
ACCAG412058AG412059
length752750
length of high quality
(start - end)
367 (386 - 752)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no272_o12.b1 PHD_FILE: MSMg01no272_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:10 2005CHROMAT_FILE: MSMg01no272_o12.g1 PHD_FILE: MSMg01no272_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGAGGAAACTTGAATGGCTGAGAAGCACCTAAAGAAATGTT
CAACATTCCTAGTCATCAGGGACATGCAAATCAAAACAACTAAGATTCCA
GTTCATACCAGTCTGAATAAGACAAGGGTAAGATAAAAAATTCAGGTGAC
AGCAAATTCTGGAGAGGATGTAGAAAAAGAGGAACACTCCTCTATTGCTT
GTGGGATTGCAATCTGGTACAACCATTCTGGAAATCAGTCTGGCAGATCC
TCAAAAAACTGGAAATAGTACTACCTAAGGACCCAGCTGTACCACTCCTG
GGCATATTCCCAGAATATTCTCTAACCTCGCTCCTAAGGACACATGCTCC
ACTATGTTCATAGCAGTCATATTCCAGAAATTGGAAACAACCCAGATGTC
CCTCAACAGAGGCATGGATACAAAAACAATGTGATACATTTACACAAAGA
AATACTACTCAGCTATTAAAAACAATGACTTCATGAAATTCTCAGGCAAA
CGGCTGGATGTAGAAAATATCATCCTGAGTGAGGTAACTCAGTCACAAAA
GACCACACATGGTACATACTTACTGATAAGTGGGTATTAGTCGACTTATT
TCTGATTGGTTAATAATAATGCCTACATCCTATAGTTGGGCAGAATTGAG
ATATGTGCTTGGTGTTACTGGTCTGGAGGTTGGAGGAAACAATGAGAAGG
GG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAAATATATAGATCTAGGGAGTT
TTATATATATATGTGTGTGTGAGAGAGAGAGAGAGAGAGAGACAGAGAGA
GACAGATACAGAGACAGAGAGACAGAGAGAGACAGAGACAGAGAAAGAGG
GTCAGACTAAGAAAAACAAAGAGACATAAAGACAGACAGACAGAATTTCA
AATAGTCCTTTACTACATAGTTAAGAGAACCATTTTGTGAAATCAATATA
ATGCCTAATTTGACATCTTGACCCATAGAGACACATACACAGTAAAAATA
GTAATTAATTAGACTATTTTCTGCTCGCCCCCCCCCCAAAACTGTTGGTC
AAAAGCAATAACAAACTGCTGGGTTGGTGTCAGTGGTTATTGTTGACATC
AAAGCATTGTACAAAACCCGTAAAATAACAAACGGAGTCACAGTTGTCTT
GAAATGAGGTAACTGTGGACAGAAACCAGATGATGAATCTAACAGTCACT
GATGCTCCAGAGATGGGATCACTGAGCAATGATGCAACCCTGTCACATTG
TATGTAACATACTTTCCCCTTAGCAATGTGCAATAAAATAAACCCTAATT
TAATTTTATCTGGAAGGGGCAAAACAATAACTTCTTAGTTTTTATTTAGA
AATGACACAATTGGCCTACCTTCTGAGATATCACAGAGACCTCCTGATCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_o12.g1 MSMg01no272_o12.g1 CHROMAT_FILE:
MSMg01no272_o12.g1 PHD_FILE: MSMg01no272_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:10 2005
         (292 letters)



>mm_chr9_12954623_12955314
          Length = 692

 Score =  495 bits (256), Expect = e-144
 Identities = 288/306 (94%), Gaps = 14/306 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaaatatatagatctagggagttttatatatatatgtgtgtgtgagagagagagag-- 58
           ||||||||||||||||||||||||| |||||||||||||| | | |||||||||||||  
Sbjct: 187 agtaaatatatagatctagggagttatatatatatatgtgagagagagagagagagagac 246

                                                                       
Query: 59  agagagagacagagagagacagat------acagagacagagagacagag------agag 106
           ||||||||||||||||||||||||      ||||||||||||||||||||      ||||
Sbjct: 247 agagagagacagagagagacagatacagagacagagacagagagacagagagagacagag 306

                                                                       
Query: 107 acagagacagagaaagagggtcagactaagaaaaacaaagagacataaagacagacagac 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 acagagacagagaaagagggtcagactaagaaaaacaaagagacataaagacagacagac 366

                                                                       
Query: 167 agaatttcaaatagtcctttactacatagttaagagaaccattttgtgaaatcaatataa 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agaatttcaaatagtcctttactacatagttaagagaaccattttgtgaaatcaatataa 426

                                                                       
Query: 227 tgcctaatttgacatcttgacccatagagacacatacacagtaaaaatagtaattaatta 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgcctaatttgacatcttgacccatagagacacatacacagtaaaaatagtaattaatta 486

                 
Query: 287 gactat 292
           ||||||
Sbjct: 487 gactat 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)