BAC Information

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BAC

Clone NameMSMg01-273J08
Chromosome9 (Build37)
Map Location 89,794,920 - 89,795,209
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik
Downstream geneRasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273J08.T7 (MSMg01no273_j08.b1)MSMg01-273J08.TJ (MSMg01no273_j08.g1)
ACCAG412544AG412545
length745727
length of high quality
(start - end)
330 (40 - 369)291 (70 - 360)
definitionCHROMAT_FILE: MSMg01no273_j08.b1 PHD_FILE: MSMg01no273_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:59 2005CHROMAT_FILE: MSMg01no273_j08.g1 PHD_FILE: MSMg01no273_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ATGGTCATCTTCGCTACATAAAAGTTTCCACCTCAAAACCAGACCACCAA
TAACAACAACAAAAGAGTTGACTCATTCACATGAAACTCAAGAATAATGA
AGACTGAAGTTTGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAACAC
CCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAAACGAAAGGATGG
ACCATCTAGTGATTGCCATATCCAGGGATCCACCCCATAATCAGCATCCA
AACGCTGACACCATTGCATACACTAGCAAGATTTTATCGAAAGGACCCAG
ATGTAGCTGTCTCTTGTCGGGGCCTACCAAACACAGAAGTGGATGCTCAC
AGTCAGCTGTTGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAA
GTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTA
TGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAAATGTATCAA
AAGATGGCCTAATCCGGCCATCACTGGAAAGAGAAGTCCATTTGGAACTC
GCAACATGGAATTTGCCCCCGTTCAGGGGAAAAGTCCAGGGTCCAAAAAA
AATTGGGTATTGAACTGGTTAACGGAAGTTGGGGGGGGAATGAGCCATCC
CTCTTCCTATATCAAGAATTATCTGTTTTGTACCCGCTTTTTTCG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCCCAATTCAAGGGTAGATGCTGCTGAGATTAAATAGGGA
GCACAGAAAAAAATGTATTCCCCACAAAAAATTAAAAATCCCCCAAATCT
TGGGAAACAAACAGGCATCCAGCTACAAGAGGTCCTGATGGTACTGTCAG
CCACCGCAGAGAACTTCTCCATGAAGCCTGATCAGTCAAGCTGCCACACT
ACAAGCCACAGAAACCACTGAGACTTTGCTGTCCAAAAGCAAAGTGGCAA
CACGCCCCGCGGATGAGGAAGGTGATTCAAAGAGAGACCAGATGAGCTGC
AGGTGAAAGGTATTTTCCTTATGCCCCCCACCCCATTGTTCTGGGCAGAA
GGCACACCGTGCACAAACAGGCCGAGAAATAAAACAGACAGGTCTTCTGG
GGAGGACTCACACACGGCTCAGCAGGAATCCAACCGAAGGTGCAGAGCCG
CAATGGATGAGCTTTGAATAGTGTTCAGAAGGCTTTACGTTTCATCCTAC
AGGGGAGCTCAGGGGCTATAATCAGAAGCTATTGTTCTTACATCTGGAGC
GAAGCCAGACCCACAGCGGAAGGGAGGCCGGTGAGAACTCTGTTTGGACT
TGAGAATCTATCACACAAAGGAATTGTGTGTGCATGCGGGAGGGGTACAC
ACTTTTGGAAGTCAGAGGACAATCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_j08.g1 MSMg01no273_j08.g1 CHROMAT_FILE:
MSMg01no273_j08.g1 PHD_FILE: MSMg01no273_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:59 2005
         (291 letters)



>mm_chr9_89794720_89795409
          Length = 690

 Score =  516 bits (267), Expect = e-151
 Identities = 285/291 (97%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagggtagatgctgctgagattaaatagggagcacagaaaaaaatgtattccccacaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||| |||||||   ||||||
Sbjct: 201 aagggtagatgctgctgagattaaatagggagcacagaaaaaa-tgtattcaatacaaaa 259

                                                                       
Query: 61  aattaaaaatcccccaaatcttgggaaacaaacaggcatccagctacaagaggtcctgat 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 260 aattaaaaatcccccaaatcttgggaaacaaacgggcatccagctacaagaggtcctgat 319

                                                                       
Query: 121 ggtactgtcagccaccgcagagaacttctccatgaagcctgatcagtcaagctgccacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggtactgtcagccaccgcagagaacttctccatgaagcctgatcagtcaagctgccacac 379

                                                                       
Query: 181 tacaagccacagaaaccactgagactttgctgtccaaaagcaaagtggcaacacgccccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tacaagccacagaaaccactgagactttgctgtccaaaagcaaagtggcaacacgccccg 439

                                                              
Query: 241 cggatgaggaaggtgattcaaagagagaccagatgagctgcaggtgaaagg 291
           ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 440 cggatgaggaaggtgattcaaagagagaccagatgagctgcagatgaaagg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space:   192042
Effective search space used:   192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)