BAC Information

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BAC

Clone NameMSMg01-274O08
Chromosome9 (Build37)
Map Location 54,583,540 - 54,740,351
singlet/doubletdoublet
Overlap geneCrabp1, Rab7-ps1, Ireb2
Upstream geneLOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61
Downstream geneC630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274O08.T7 (MSMg01no274_o08.b1)MSMg01-274O08.TJ (MSMg01no274_o08.g1)
ACCAG413494AG413495
length720719
length of high quality
(start - end)
341 (380 - 720)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no274_o08.b1 PHD_FILE: MSMg01no274_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:31 2005CHROMAT_FILE: MSMg01no274_o08.g1 PHD_FILE: MSMg01no274_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,583,540 - 54,583,879)(54,740,071 - 54,740,351)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGTATACCTTGGACATTGAATTATTCGTGTGCTCTTCAGTGAC
TGAATAATTATGATGTGAACCCCAGATATGCTTGTTCAAAGACTATATTA
AACCCCTACCTTTCACCTCTCTACTGTCAGAGCACCAAGCACATGAGGTC
ATTAGCATGGTCTACTGTGAAGCAAGAATAACAGGCCTCTTATGTACAAT
GAATGTCTTTGACATGCAATCAAGACTATGAGTCCTGCCTCAGAATAATA
TTTATAAATGGATCAATATTTTCATAGGATTAAAGGGAAATAACTCCATC
AAAATAGTTTTATTTATCGCCCCCCCCCCCCACACCTACCTGAGCTCAAC
AGATCTAATACCGTCTGTGATTTCAAAGTATCAATACACATACACAATGC
TTTGAATTATCTTCAGTGGTTGTAATAAAATAGGAACAATACTGTGGTTT
GATTTAGTGACCAAGTCAATTACTGTTAATGCCTCCTGGTTTATTGTGCA
CATATGTGATCAAGAAAAACATTACCTTTCTGCTAGAAGTTAAGAGAAAT
AAAAATATAATTATTTTTCTATCAAAGTTCCTAGATCTCCTCTATGTGTG
TTATAGAGCAAATCTGGGAGACAGAGTAACTGTGCATCACTGAGACATCT
GTAGGAAGAGTTGTGATCTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATCATTTCGAAACAATTTCACA
GCTTTAAGGTATTTTTCCATTCACTCAAGTTTGGTTTTGTCAAAACCTAA
AAAAGAGGAACAGCAAAATGAAATGTAGTAGAATTCTGAGATCTTGATGA
GAGGGATGTGGAACTGCAGTTGAGCTAAGTCCACTCACTCACACACCCTT
GACTCACACTTGTCTCTTGCCCTGCTTAACCTCGCCAGTCTCCACTGAGC
AGTCCAGACTGCACGTGGAAATCACATGGACACACCACACCGGCTTATAC
GAGTGGCTGTGTTTTCAGCCCCACTCCACAGCAGATATTCATGTGAGCTG
TCTTCAGAATTCCAGACCCTAGTTTGTGAACTGTGCAGCTGGGCCCTAGA
CACAAAGCAGCAACAAGCTCTTCCTGCTGTGCCCTGTCTGAAATCACTGA
CCCACTGAAACCACGAGGCAATAAATGATTATTGCCGTGTTTGTTCCTGA
TTGGTCAGGATCCTGTGGCATATAGTATGTGCTCTACCAGAGCTAAGCAG
CCCTACTACTGTTTTATAAACCACTACATTTTAGGCTAGCTTGTTATAGT
GTTAAAAATAATCACCAGCTATCTTAACTCATATTAGTATGTAAGTAATG
AGGTGAAACAGACCTAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_o08.b1 MSMg01no274_o08.b1 CHROMAT_FILE:
MSMg01no274_o08.b1 PHD_FILE: MSMg01no274_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:31 2005
         (341 letters)



>mm_chr9_54583339_54584079
          Length = 741

 Score =  650 bits (336), Expect = 0.0
 Identities = 339/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   cacacctacctgagctcaacagatctaataccgtctgtgatttcaaagtatcaatacaca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cacacctacctgagctcaacagatctaataccgtctgtgatttcaaagtatcaatacaca 261

                                                                       
Query: 62  tacacaatgctttgaattatcttcagtggttgtaataaaataggaacaatactgtggttt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tacacaatgctttgaattatcttcagtggttgtaataaaataggaacaatactgtggttt 321

                                                                       
Query: 122 gatttagtgaccaagtcaattactgttaatgcctcctggtttattgtgcacatatgtgat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gatttagtgaccaagtcaattactgttaatgcctcctggtttattgtgcacatatgtgat 381

                                                                       
Query: 182 caagaaaaacattacctttctgctagaagttaagagaaataaaaatataattatttttct 241
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 caagaaaaacatcacctttctgctagaagttaagagaaataaaaatataattatttttct 441

                                                                       
Query: 242 atcaaagttcctagatctcctctatgtgtgttatagagcaaatctgggagacagagtaac 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atcaaagttcctagatctcctctatgtgtgttatagagcaaatctgggagacagagtaac 501

                                                   
Query: 302 tgtgcatcactgagacatctgtaggaagagttgtgatctt 341
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgtgcatcactgagacatctgtaggaagagttgtgatctt 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no274_o08.g1 MSMg01no274_o08.g1 CHROMAT_FILE:
MSMg01no274_o08.g1 PHD_FILE: MSMg01no274_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:31 2005
         (281 letters)



>mm_chr9_54739871_54740551
          Length = 681

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatcatttcgaaacaatttcacagctttaaggtatttttccattcactcaagtttggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 481 tcatcatttcgaaacaatttcacagctttaaggtatttttccattgactcaagtttggtt 422

                                                                       
Query: 61  ttgtcaaaacctaaaaaagaggaacagcaaaatgaaatgtagtagaattctgagatcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttgtcaaaacctaaaaaagaggaacagcaaaatgaaatgtagtagaattctgagatcttg 362

                                                                       
Query: 121 atgagagggatgtggaactgcagttgagctaagtccactcactcacacacccttgactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgagagggatgtggaactgcagttgagctaagtccactcactcacacacccttgactca 302

                                                                       
Query: 181 cacttgtctcttgccctgcttaacctcgccagtctccactgagcagtccagactgcacgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cacttgtctcttgccctgcttaacctcgccagtctccactgagcagtccagactgcacgt 242

                                                    
Query: 241 ggaaatcacatggacacaccacaccggcttatacgagtggc 281
           ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 241 ggaaaccacatggacacaccacaccggcttatacgagtggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)