BAC Information

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BAC

Clone NameMSMg01-276A09
Chromosome9 (Build37)
Map Location 69,459,263 - 69,601,382
singlet/doubletdoublet
Overlap genenone
Upstream geneRora, 9530091C08Rik, Narg2, EG665815, EG244913, Anxa2
Downstream geneFoxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276A09.T7 (MSMg01no276_a09.b1)MSMg01-276A09.TJ (MSMg01no276_a09.g1)
ACCAG414319AG414320
length715718
length of high quality
(start - end)
317 (45 - 361)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no276_a09.b1 PHD_FILE: MSMg01no276_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:52 2005CHROMAT_FILE: MSMg01no276_a09.g1 PHD_FILE: MSMg01no276_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,601,070 - 69,601,382)(69,459,263 - 69,459,547)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATATCACGTGACTTACTTTATATGTATGAATTTGTATATGAGTACC
TGGGAGTGAGGGATGGTCGCCCGCCGCCACATGTGGGTGCTGAGAATCGA
ACCTAGGTCCTCTGCAAGGGCATCAAGCACTCAACACTGAGAAATCTCTC
CAGATCCTGCTTCCAGATAATGCACAGTTTGTTTTAATTGACTCTGTTAA
TTTCTTCCACAGAGTGTATGATGGTAGCTAAAGTAATACAGTACAGGAAG
AGATGGTTTTCCACAAGGATTTTTCCCACATTCTTCTCAACCCTTCCTAG
TTTAGCTTATTATACTACCCCCCACCACGCTGATTTAATGGGGGGCGGGG
TTCAAGCTTGGAGATAAGGTCATAAGGTGAGGAGGGAAAACAGCTTTGAC
CAATTGGACCAAAAGTAGTGCTGAAGAAATTATTAGTTGTTTTATAACTA
GAACCTATCTAATCCACCAATACTAACAATACAAACCCCAGAAATTGCCA
TGAGAAATCAGAGTTGTCTGAACAAAATCTTCCTTGGGAGATTTTTTTTT
CCTACCAGGACGTCATCAGGAATATTTGGACAAAGGATTTTTCTTCAGGA
CAGCCCCCTTCGTTTGGATCTGCAAATAACTGATGTCAAACCAGTTGCAA
GCTTTTGGGGGAGAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCGAGTTGTGATTTGCCCATTGCCTG
TGCGTGGTTGGAAAGACTGCTCCGGGCTCCGTCACTCACAAAGCCACTAA
GATCCATCGCTTCCTATTGTGTGGTAGCGGGTTAACATTAACGGTTTGTG
ATCAGTGATTTTTCTAAAAGAAGTAACATCTGCATTTTAAACGTGAATTT
TAAGCAGAAAGACCTAGATGTATGAGGCAAGCCCTCAGAAGCCGGCTAAC
TGTGTTTTATGCCATTAATTACCGCTGCTTATCAAAGTGCCGTCTCCAAG
CTAATTGCTTATTTTTACCCCCCCCACTCCGATGAGCTATGGCCAAGAAT
AAACAATAAAACCCAAAATCAGCAGAAATGGCTGGTTTAACGTGTCAGAG
AGCTACTGAATGTCTGCAGTCATCTCCACGTCAAGTTAGGCGAGGCAGAA
ACTGGTCAGAGATGAATCATTGATTTGAGGGCAGTTCCTACCAGGATGAA
AGAAACTGACTTGTCTCTGCCTAAGGTCATAGCTAATCCCAGTACTCCCA
GATCCCACCTTCAGCTTGCTATGGGAAAAATTAAGCAGGAAAATTAGCAA
TTCGGAGTTTTAGAGAATAATTTCTTTCAGGTGGGACAGGGCAGAAACAG
GGCTACCTGTCTTCTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_a09.b1 MSMg01no276_a09.b1 CHROMAT_FILE:
MSMg01no276_a09.b1 PHD_FILE: MSMg01no276_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:52 2005
         (317 letters)



>mm_chr9_69600707_69601423
          Length = 717

 Score =  559 bits (289), Expect = e-164
 Identities = 307/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatatcacgtgacttactttatatgtatgaatttgtatatgagtacctgggagtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gaattcatatcacgtgacttactttatatgtatgaatttgtatatgagtacctgggagtg 617

                                                                       
Query: 65  agggatggtcgcccgccgccacatgtgggtgctgagaatcgaacctaggtcctctgcaag 124
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agggatggtcgtgagccgccacatgtgggtgctgagaatcgaacctaggtcctctgcaag 557

                                                                       
Query: 125 ggcatcaagcactcaacactgagaaatctctccagatcctgcttccagataatgcacagt 184
           |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 556 ggcatcaagcactcaacactgagaaatctctctagatcctgcttctagataatgcacagt 497

                                                                       
Query: 185 ttgttttaattgactctgttaatttcttccacagagtgtatgatggtagctaaagtaata 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 496 ttgttttaattgactctgttaatttcttccccagagtgtatgatggtagctaaagtaata 437

                                                                       
Query: 245 cagtacaggaagagatggttttccacaaggatttttcccacattcttctcaacccttcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cagtacaggaagagatggttttccacaaggatttttcccacattcttctcaacccttcct 377

                        
Query: 305 agtttagcttatt 317
           |||||||||||||
Sbjct: 376 agtttagcttatt 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no276_a09.g1 MSMg01no276_a09.g1 CHROMAT_FILE:
MSMg01no276_a09.g1 PHD_FILE: MSMg01no276_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:52 2005
         (286 letters)



>mm_chr9_69459063_69459748
          Length = 686

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgagttgtgatttgcccattgcctgtgcgtggttggaaagactgctccgggctccgtca 60
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tcgagttgtgagttgcccattgcctgtgcgtggttggaaagactgcttcgggctccgtca 260

                                                                       
Query: 61  ctcacaaagccactaagatccatcgcttcctattgtgtggtagcgggttaacattaacgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcacaaagccactaagatccatcgcttcctattgtgtggtagcgggttaacattaacgg 320

                                                                       
Query: 121 tttgtgatcagtgatttttctaaaagaagtaacatctgcattttaaacgtgaattttaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtgatcagtgatttttctaaaagaagtaacatctgcattttaaacgtgaattttaag 380

                                                                       
Query: 181 cagaaagacctagatgtatgaggcaagccctcagaagccggctaactgtgttttatgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaaagacctagatgtatgaggcaagccctcagaagccggctaactgtgttttatgcca 440

                                                        
Query: 241 ttaattaccgctgcttatcaaagtgccgtctccaagctaattgct 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaattaccgctgcttatcaaagtgccgtctccaagctaattgct 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)