BAC Information

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BAC

Clone NameMSMg01-276D10
Chromosome9 (Build37)
Map Location 27,204,701 - 27,204,923
singlet/doubletsinglet
Overlap geneSpata19
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b
Downstream geneLOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276D10.T7 (MSMg01no276_d10.b1)MSMg01-276D10.TJ (MSMg01no276_d10.g1)
ACCAG414459AG414460
length740752
length of high quality
(start - end)
235 (127 - 361)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no276_d10.b1 PHD_FILE: MSMg01no276_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:06 2005CHROMAT_FILE: MSMg01no276_d10.g1 PHD_FILE: MSMg01no276_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTCCTCTAGCAGTTTGATAAGTTAGTAACAATGCCAGCACTTCT
CTTTTCTCTTACCAGCCTATACCCCACATCCTCTCAGACATGAATTAAAC
TCCACTCTAGGTGGGGAATTCGGTAAAAAAAAAAAAAAAAAAAAAAATGA
GTTTCTCAGTTGTGTAGAGAGTGAAGACATGATTCCTGTCTCCTATTTAT
CCCTGCAGTCTAGAACTTTGGGTGATGAGTCATAGAAGAATTCTACTCAC
TTTGTTCAACCAGTGCTGCACATTGGATACAGCTTCGCTTTCTTCAACTT
CAATGTCCTGGTACATGNNGTCCCCCCCCCCCACTTCAGAAAACCCAGAG
AGAGGCTCCCACCCTCACCACTAAGACAAAAGACACATGACATGAGATGA
CTCTGAAGCACAGCAGGAGTGTAGAAGGGAGACGACAGGCTGGCCACAGT
TCCAAATGGCCACTGCTGCCACCCACTCACCGAGTTCACCCTTGGTGGGA
AGGGTAGCCCTACGGTTTTCCGGGCTAAGATGTACATAATCCATGTTGTA
ATGATCATCTTCAGACTTACAGAGGGCCTCCTTGGCTCCCTCCTTCCATT
GAAGCTGTCTGAGAACTTCTGTGAAATAGCAAGGCTATTGAAGGGAGGTT
CCCCCTGATTGTTTGGCAAGAGATGATGTGACAATGACCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAGACCAGCATAGTCAAC
TAACCTGGACCTCCGGGGGCTCCCAGAGACTGCACCACCAACCAAAGAGC
TAGCGTGGTCTGGACCTAGTCCACCCCCCAGACCCCCGACACACATACAC
ACATATGTAGCAAATGTGTAGCTTGGTCTTCATGCTAGTCTCCCAACAAG
TGGATCAGAGGCTGTCCCTGAATTGGTTACATGTCTTTGGATCTTTTCGC
CTAACTGGGCTGCTTTGTCTGGTCTCAGTGGGAGAGGATGCACCTAGTCC
TGCAGATACCTGANGTATTAGGCCCGAACGACCCCCCAGGGGGTGGGGGA
AGTTCTCCCTTCTCAGAGGAAAAGGGAAAGAGAGAATTGGGGAGAATGTG
GGAGGGACCCCTGCACAGAGAGGTGGTCAAATATTATTATGTAAAGTGAA
TAATTCATTTATTGCAAAATATGACTCCTATGTATAATATTTCCCCTTCT
CTTGCATTTTGACATCACTAGCCTACCACAATTTTATGTTTGTACTGTGT
TCCCTACCTACTGCCTGGTATCCGCCTACCCTTAACTGTGACTAATTCTC
TTCGGCGCCAGTCTACTGGTTTATTCCAATTTCTCACTTTCAACCCTGCT
TCCTGTTTGTTACTGCTCCGCTGTTCCAAACTCCTCATTTTCCCTTCCTT
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_d10.b1 MSMg01no276_d10.b1 CHROMAT_FILE:
MSMg01no276_d10.b1 PHD_FILE: MSMg01no276_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:06 2005
         (235 letters)



>mm_chr9_27204430_27205064
          Length = 635

 Score =  381 bits (197), Expect = e-110
 Identities = 220/235 (93%), Gaps = 12/235 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcctctcagacatgaattaaactccactctaggtggggaattcggtaaaaaaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 494 catcctctcagacatgaattaaactccactctaggtggggaattcggt------------ 447

                                                                       
Query: 61  aaaaaaaaaaatgagtttctcagttgtgtagagagtgaagacatgattcctgtctcctat 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 taaaaaaaaaatgagtttctcagttgtgtagagagtgaagacatgattcctgtctcctat 387

                                                                       
Query: 121 ttatccctgcagtctagaactttgggtgatgagtcatagaagaattctactcactttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttatccctgcagtctagaactttgggtgatgagtcatagaagaattctactcactttgtt 327

                                                                  
Query: 181 caaccagtgctgcacattggatacagcttcgctttcttcaacttcaatgtcctgg 235
           ||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 326 caaccagtgctgcacaacggatacagcttcgctttcttcaacttcaatgtcctgg 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)