BAC Information

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BAC

Clone NameMSMg01-276J15
Chromosome9 (Build37)
Map Location 80,770,278 - 80,770,515
singlet/doubletsinglet
Overlap genenone
Upstream geneFilip1, LOC666490, Senp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038, Htr1b, LOC671392, 4930486G11Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276J15.T7 (MSMg01no276_j15.b1)MSMg01-276J15.TJ (MSMg01no276_j15.g1)
ACCAG414740AG414741
length585751
length of high quality
(start - end)
---236 (130 - 365)
definitionCHROMAT_FILE: MSMg01no276_j15.b1 PHD_FILE: MSMg01no276_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:34 2005CHROMAT_FILE: MSMg01no276_j15.g1 PHD_FILE: MSMg01no276_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAGTTAGTTTTTTTTTTTGCTAAAAAATCTTTTTATTATTAGGGTGTAAA
ANGTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAAATTCCCCNCCCAGCAGCCGGAAGAGTGTTCCTCTTTCTCCCTATTT
CTTACCAGNAATCTGGCTGTTTAACCGGATTTTCCCCCCAAACCTTTAAA
CCCCCTTTTTCCTTAAACTGGGTCTGGGGGGTTTAAAAAAAATACTCCCC
CCAGGGGGGATTTCTATCTTTNAGGGGGGAAAATTTTGGGGGAATTTTTT
TTCCCCCCCTAGGTGACCCACTTTGGGGGGTGTGGCTTTTTAAAATACTT
TTTTCCCTTTTTTTAAAAGGGGGGGGNNNCTCCCNNNNNNTTTGGCCAGC
TTCNCCCNNNCNCCCCCCCCTCCCTTATTGGGTTTTTTTTTTTAAATATT
TTTTTTCTTATACCTGGGGTTCGTTTTTATAACCCCTTAGTTTATTCTTT
TTTTTATAAACTAGACCACTTCTTTTCTTTATCGTCTTTTTTTTATTTTG
AGTATAAGAAAATTATATAACTCTCCTTCTTCTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAATCTTATGATGCCTTGGGAAGT
AAGGGTGAGCTGATTTAGGTTAGGACCCTATAGGAGGAGAGAAAAGCATC
TGTAAATTTGATGCCATCATAGAATGAGGAAGGACAGATATGGGCTGGGG
AAATAAAAAGTGCAAAGTTTCCTCTACTTGGGCAATGGAAAATGACTAAA
AGACCTTAAACACATGAGCATGATGGATTTTTTTATATTGACCTCTATCT
ATAATATGTAACTGACAATTATAGAGATAGGACACTACTACAATATTATA
AACAAGCTATCTGGCTATTTTTTTTGGCCCCCTCCCATTACATATTCCCA
CTACTATGAGAACCTGAAAAGGCCACCTCTTGTGGTCAGGCAGGATACCC
AGTGGATAGATAAGGACACCAACTCACTCATAAAACTTTAGGCCCAAAAT
TTGTCCTGTCTACAAGAAATGTTGGGACAAAGATGGAACAGAGAATGAGG
GAATGGCCAACCAATTATCAGGCCAACTTGAGACCCATTTCATAGACAAG
CACCAATCCCTGACTATATGAATGATACTCAGTTATGCTTTTAGACAGAA
GCCTAGCTTGGCTGTCCTCTGAGAGGCTCTACTTAGCAACTGACTGATAC
AGATGCTGAGACCCCCTGCCAAACATTGGATGGAACTTGGGGAGTTTTAT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_j15.g1 MSMg01no276_j15.g1 CHROMAT_FILE:
MSMg01no276_j15.g1 PHD_FILE: MSMg01no276_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:34 2005
         (236 letters)



>mm_chr9_80770078_80770715
          Length = 638

 Score =  356 bits (184), Expect = e-103
 Identities = 225/240 (93%), Gaps = 6/240 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataggaggagagaaaagcatctgtaaatttgatgccatcatagaatgag---gaaggaca 57
           ||||||||||||||||||||||| |||||||||||||||||||||||||   ||||||||
Sbjct: 201 ataggaggagagaaaagcatctg-aaatttgatgccatcatagaatgaggaagaaggaca 259

                                                                       
Query: 58  ga-tatgggctggggaaataaaaagtgcaaagtttcctctacttgggcaatggaaaatga 116
           || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 260 gattatgggctagggaaataaaaagtgcaaagcttcctctacttgggcaatggaaaatga 319

                                                                       
Query: 117 ctaaaagaccttaaacacatgagcatgatggatttttttatattgacctctatctataat 176
           |||||||| |||||||||| |||||||||||||||||  |||||||||| ||||||||||
Sbjct: 320 ctaaaagatcttaaacacaggagcatgatggatttttg-atattgacctatatctataat 378

                                                                       
Query: 177 atgtaactgacaattatagagataggacactactacaatattataaacaagctatctggc 236
            | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtttaactgacaattgtagagataggacactactacaatattataaacaagctatctggc 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 638
Length adjustment: 9
Effective length of query: 227
Effective length of database: 629
Effective search space:   142783
Effective search space used:   142783
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)