BAC Information

Click to search

BAC

Clone NameMSMg01-277C16
Chromosome9 (Build37)
Map Location 120,094,204 - 120,094,437
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp
Downstream geneLOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277C16.T7 (MSMg01no277_c16.b1)MSMg01-277C16.TJ (MSMg01no277_c16.g1)
ACCAG415144AG415145
length740727
length of high quality
(start - end)
---241 (111 - 351)
definitionCHROMAT_FILE: MSMg01no277_c16.b1 PHD_FILE: MSMg01no277_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:15 2005CHROMAT_FILE: MSMg01no277_c16.g1 PHD_FILE: MSMg01no277_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
CCTCACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAGGATGTGGTCACAAGCAGACAACTGGTGTGGAGGATGAGG
CGTTCCGCCCCTGAGGGTGTCTCTCTTGGGACCGCAGGAACAATGACATA
GGACAGGAGTACCTAAAAGAAGCACTAGGGCAGGAGGGCTCTGAGGACAG
TGGAATGGCATGGTGGAATGGAGAACACTTGCTTATTCGCTCTTAAAGGT
ACTTTACATACAGTAGCCAACTGCTCTCTCTCCCCATAGGACATCATTTG
GTGCTTAATGAAACCCAAGAACAGGTCCATAGAATTAACTGAATATTTTT
TTTGTTCCGCCCAGCTACCAAAACCAGTCATGACAGACTATACTGATGTC
ATTTCCCTCCCCCACTGACATAAGTCCAAAGTTTACTGTGGTCCACCATG
ATACTGTTTCATAAGATAACAAACTGTCTTAGTCAGTCATGGTGCCCTTC
TTTAACATTTTTTAAAGATTATTTTATTTTATGCATATGAGAGCTTGTGG
GCATGTATGCCTGTGCTTCACACGTGTGCAGTGCCCATGGAGGTCAGAGG
AGGGCATTAGAAGGCCTGCAGCTGTCGTTACAGACGGCTGTGAGTCACCA
TGTGGGTGCTGGGATTCAAACCCTCGTCCCCTGGAAGGGCAGCCGGTGCT
TCCACTGAGCCATGGCTCCAGTCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_c16.g1 MSMg01no277_c16.g1 CHROMAT_FILE:
MSMg01no277_c16.g1 PHD_FILE: MSMg01no277_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:15 2005
         (241 letters)



>mm_chr9_120094004_120094639
          Length = 636

 Score =  416 bits (215), Expect = e-121
 Identities = 231/239 (96%), Gaps = 5/239 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagggtgtctctcttgggaccgcaggaacaatgacataggacaggagtacctaaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgagggtgtctctcttgggaccgcaggaacaatgacataggacaggagtacctaaaaga 260

                                                                       
Query: 61  agcactagggcaggagggctctgaggacagtggaatggcatggtggaatggagaacactt 120
           | || ||||||||||||||||||||||||| |||||||||     |||||||||||||||
Sbjct: 261 aacattagggcaggagggctctgaggacagcggaatggca-----gaatggagaacactt 315

                                                                       
Query: 121 gcttattcgctcttaaaggtactttacatacagtagccaactgctctctctccccatagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gcttattcgctcttaaaggtactttacatacagtagccaactgctctctctccccatagg 375

                                                                      
Query: 181 acatcatttggtgcttaatgaaacccaagaacaggtccatagaattaactgaatatttt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 acatcatttggtgcttaatgaaacccaagaacaggtccatagaattaactgaatatttt 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 636
Length adjustment: 9
Effective length of query: 232
Effective length of database: 627
Effective search space:   145464
Effective search space used:   145464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)