CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCTCTTGCATCAGAACACAGAGACTCAGCTTTGACTTAATGGAG
AAAACAGACCAAGAATTATTGCAGAGACGAGAGTTATAGCAGGGCTGGGT
GGGAGCTAAATGCTGGTGAATCAACAGTGTATTCAATGAAGTGTCTTTAA
ACAGAAATACATGCAAGACAATGAAAAGCCAGAAACTACAGGAATTAACA
ACATATTTTCAACAGGAACAATGGGCCCGAGTTCACTACTAGAATGTCCA
TGGTGATTTAATAGAAAACCACAATTGATAGAAATTGACTGCTTTTCCTT
GCCTTGTTATTCTCATTGCTCCACTCAAGCCTGGTTCTCCTTTCATCATA
ATAACTCTGATTCAGGCCACCAATGTCCAGTTCTAAGAGGCTTTGGGGTT
TGTTCTTTGCCCTCTTCAGACTTCCCTACCACCAACGTCTACACAATCAC
CATATCTTAAGGGCTTCTCCTTTTCTGTCTTCCTCAGAATTACACCATAG
ATTTTTGTCATGATTTGTTCATGGCCTTCTTTTCTGAGTCTTCTCCTTCA
TTTCTTGGTGGGAACACCTCATAATCTCACATTAGTTTCTTCCCTGAAAA
CCTAGTGCAAACCAATAGCCTGAGCAGTAGCCAATATGCTAAAGGCTTTC
GAATGGGCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTAT
ATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTTGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTT
GCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTA
CAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATA
TCTTCAAGATATATTATACAATTTCCTAAACACATGAAACTCAAGAAAAA
TGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAA
CACCCTTGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGA
TGGACCATGTAGAGACTACCATATCCAGGGATCCACCCCATAATCAGCAT
CCAAACGCTGACACCATTGCATACACTAGCAAGATTTTATCGAAAGGACC
CAGATGTAGCTGTCTCTTGTGAGACTATGCCAGGGCCTAGCAAACACAGA
AGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGTCTCCCAATGGA
GGAGCTAGAGA

Query= MSMg01no277_m02.b1 MSMg01no277_m02.b1 CHROMAT_FILE:
MSMg01no277_m02.b1 PHD_FILE: MSMg01no277_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:57 2005
         (585 letters)



>mm_chr9_27644011_27644993
          Length = 983

 Score = 1015 bits (525), Expect = 0.0
 Identities = 569/585 (97%), Gaps = 4/585 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacgagagttatagcagggctgggtgggagctaaatgctggtgaatcaacagtgtattc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 agacaagagttatagcagggctgggtgggagctaaatgctggtgaatcaacagtgtattc 820

                                                                       
Query: 61  aatgaagtgtctttaaacagaaatacatgcaagacaatgaaaagccagaaac-tacagga 119
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 819 aatgaagtgtctttaaacagaaatacatgcaagacaatgaacagccagaaacttacagga 760

                                                                       
Query: 120 attaacaacatattttcaacaggaacaatgggcccgagttcactactagaatgtccatgg 179
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 759 attaacaacatattttcaacaggaacaatgagcccaagttcactactagaatgtccatgg 700

                                                                       
Query: 180 tgatttaatagaaaaccacaattgatagaaattgactgcttttccttgccttgttattct 239
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 699 tgatttaatagaaaaccacaactgatagaaattgactgctttttcttgccttgttattct 640

                                                                       
Query: 240 cattgctccactcaagcctggttctcctttcatcataataactctgattcaggccaccaa 299
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 639 cattgctccactcaagcctggttctccttccatcataataactctgattcaggccaccaa 580

                                                                       
Query: 300 tgtccagttctaagaggctttggggtttgttctttgccctcttcagacttccctaccacc 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 579 tgtccagttctaagaggctttggggtttgttctttgccctcttcagacttccctactacc 520

                                                                       
Query: 360 aacgtctacacaatcaccatatcttaagggcttctccttttctgtcttcctcagaattac 419
           ||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 519 aacatctacataatcaccatatcttaagggcttctccttttctgtcttcttcagaattac 460

                                                                       
Query: 420 accatagatttttgtcatgatttgttcatggccttcttttctgagtcttctccttcattt 479
           ||||||||||||||| |||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 459 accatagatttttgtaatgatttgttcatggccttcttttctgagtctt---cttcattt 403

                                                                       
Query: 480 cttggtgggaacacctcataatctcacattagtttcttccctgaaaacctagtgcaaacc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cttggtgggaacacctcataatctcacattagtttcttccctgaaaacctagtgcaaacc 343

                                                        
Query: 540 aatagcctgagcagtagccaatatgctaaaggctttcgaatgggc 584
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aatagcctgagcagtagccaatatgctaaaggctttcgaatgggc 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 983
Length adjustment: 10
Effective length of query: 575
Effective length of database: 973
Effective search space:   559475
Effective search space used:   559475
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)