BAC Information

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BAC

Clone NameMSMg01-278O11
Chromosome9 (Build37)
Map Location 69,589,353 - 69,589,578
singlet/doubletsinglet
Overlap genenone
Upstream geneRora, 9530091C08Rik, Narg2, EG665815, EG244913, Anxa2
Downstream geneFoxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278O11.T7 (MSMg01no278_o11.b1)MSMg01-278O11.TJ (MSMg01no278_o11.g1)
ACCAG416412AG416413
length766761
length of high quality
(start - end)
226 (182 - 407)238 (127 - 364)
definitionCHROMAT_FILE: MSMg01no278_o11.b1 PHD_FILE: MSMg01no278_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:22 2005CHROMAT_FILE: MSMg01no278_o11.g1 PHD_FILE: MSMg01no278_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAATTATTTTTACAGCAATTTAACTTCTTCTCTTCCTCCCCCTTTTCTA
TCNCCTTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCCTTTTTCAAGAAGACATTGGGCAGACACATTTCCA
CCTGGAGGCTGCCCACATACCCTTACCCGGGCTTTGAGTTTATACAGAAT
GTGAGCAATATCCTGTACTGATGGAGCTTGAGCTGTGAGCTTGTGAGATT
CTGTGCCTGGCTGTAAGTGGCTGCGCCAGCTCCCTTGCTCGATGTTCCAC
TGGCTGGGAGCCTGGGATTGGTAAAGGTCCCTGCGTGCTCACGATACAAC
CCTGAATTCACATGCTTATTTTTGTTCTTAATTACATCCATTGATGTTGA
AAAACATTTATTTTTTTTTTTGACACCCCCCCCCCCCCCTGGGATCTTAG
AGTTGCTAAATTGTTTGGTTTTTATATCAAGAACACTAAAGAGATGTTCA
CAGGCCAGACGGTATGGTACAACATGTGTTCCCCAGGAGGATGGATCACA
TTGCTTATGGAAAGTCTAAAGTCAGTGTCACCCTGAGAAGCCTGGTTGTT
TGACTCTGAGGATTGGGAAACCCTGATTGGCTACTCCCAAGTGCTTGCCA
GTGCTATCTCAGGATATTTATTATTTTTTTCACCTGAACACACCATTTTT
GCACCCTCTGTATGAAACAACGCTTGTTAATATTCCAACATGACCTTTTA
TGACTGACATCCTTTT
TCTTTTTCTTTTATATTTTTTTATTTTATCAATCTTACAACCTCCTTTTT
CCCTCTATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTACTTAAAGGCTGGAGGTAGGTG
TTGCAGTAATTTCTTACCCCCCTAAGCTTGTATAAAAACCACACAACTCA
GTTATTCATAAACTGCCTTAGTCAGGGTTTCTACTACTGCACAAAACATC
AGGACTAGGAAGCAAGTTGGGGAGTAAAGGATTTACTCAGCTTTCACTTC
CACATTGCTGTTCATCACCAAAGGAAGTCAGGACAAGAGCTCACATAAGG
CAGGAACCTGGAGGTTTTTATTTGATGCAGAGGCCATGGTAGGGTGCTGC
TTACTGTATTGTTTCCCCCGCCCCGCCCCATTTGCTTTCTTATAGAACCC
AGGACTACCAGTCCAGGCATGGAACCAAAACACAATGAGCCCTCCCCTCT
TGATCACTAATTGAGAAAATGTCTTACAGCTGGATCTCATGGAAGCATTT
TCTCAACGGAGGCTCCTTTCTCTGTGATAACTCCAGCTTGTGTCAAGCTG
ACACACTAAATTAGCCAGTACTTAATCTATATGCATAGGCTGGTCAAATC
TATCACTATACTAATTGATTGCCCATCTACGATTGCCTCTTGCTAATTGT
TGTTTCTTCAGGACATGTGAATACTGCTCCATCTTTATCCCACTTCCTCT
TACTCTGACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_o11.b1 MSMg01no278_o11.b1 CHROMAT_FILE:
MSMg01no278_o11.b1 PHD_FILE: MSMg01no278_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:22 2005
         (226 letters)



>mm_chr9_69589153_69589778
          Length = 626

 Score =  398 bits (206), Expect = e-115
 Identities = 221/226 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttgagtttatacagaatgtgagcaatatcctgtactgatggagcttgagctgtgagct 60
           ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 426 ctttgagtttacacagaatgtgagcaatatcctgtactgatggagcttgatctgtgagct 367

                                                                       
Query: 61  tgtgagattctgtgcctggctgtaagtggctgcgccagctcccttgctcgatgttccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgtgagattctgtgcctggctgtaagtggctgcgccagctcccttgctcgatgttccact 307

                                                                       
Query: 121 ggctgggagcctgggattggtaaaggtccctgcgtgctcacgatacaaccctgaattcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ggctgggagcctgggattggtaaaggtccctgcgtgctcacgatacaaccctgaattcac 247

                                                         
Query: 181 atgcttatttttgttcttaattacatccattgatgttgaaaaacat 226
           ||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct: 246 atgcttagtctagttcttaattacatccattgatgttgaaaaacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)