BAC Information

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BAC

Clone NameMSMg01-280E02
Chromosome9 (Build37)
Map Location 67,088,235 - 67,088,516
singlet/doubletsinglet
Overlap geneTln2
Upstream geneDapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1
Downstream geneLOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280E02.T7 (MSMg01no280_e02.b1)MSMg01-280E02.TJ (MSMg01no280_e02.g1)
ACCAG417394AG417395
length713713
length of high quality
(start - end)
314 (45 - 358)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no280_e02.b1 PHD_FILE: MSMg01no280_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:03 2005CHROMAT_FILE: MSMg01no280_e02.g1 PHD_FILE: MSMg01no280_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTGGCTTTTGTTAATCGCCCGGTTTCTGGTGCTTTCCCTGCTGC
CTGTCCGGGATTGATTTCTGCTTTGGTTCTCTCGTGGTCAGTTGTTTGCA
GATCTCCCTGTTGTCTTTCTGTTATTGATTTTCAGTTTGATTCCATTATG
GTCGGAAAACATGCTGAGGACGTTTCCAGGGTTTGGAGTTTTGTTTTGCT
TTTCCCTTTAAGTTGTTATTTCATGTCTCTGAATGTTTGTCTGCATGTAA
TTACACATCTCAGGTGTGCCAAATGCTCACAGTGGCCAGAAGGGGGCACT
AGATCCTCTTTTTTTATACCCCCCCACCCCTGTGAACTCCCATTGGGTGC
TAGGGAACCAATTCCAGGTTCTGAACAAGAACATCCAGTGCTGCTAACCA
CTGATCCATGTCACCAGCCTTTACCTTACCCTGCTTATTTGTTTGCAGAC
AGGCACTCACTATGTAGCTTTGGTTGGACAGGATCTCCCTAGCATACCAG
ACTCACAGCTTCTGCCTGCCTCTGTCTACAAGTGCTAGGACCTAGTGTGT
GCCATCTATCTGCCTCACTTTTTCTCTCTGACACACTCATAGTCTGATGT
TTCCCTCTGTGACACCAGAAAGCCTTGTTCTACATTGTTCACTATTGTTT
GGTTGACCCTGAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGTGGATGTCCTGTTTCTCCTCG
GAATAACCAGAGGTACTTTTCTCGGCAGTTAACTAGACCCACTCACTGGT
TTTCACCCGCCCCCCTCCCCCACTATGTAAAATGGTGCTGGGCAGGCAGA
CCGGGTTTGCGACTTCCTGGTGTAAGGATGGGGAGGGAGGAGAAACTCCG
TGTACCCTGCTTAGCTCCACTGCACAGTCACCGCTGGATGCAGGACGCAG
GGGCTGAGCGGCCGCCAGTGAACACTGACCTTTGGCTTTGCTCTTGGCTT
CAGCTGCTCTTTTTTTTTGCCCCCGGCCTCCATGGACGCTGCAGCTCCCA
GTAACTCAGTTTCTGCAATGACGAAAGAAACTTCTGGATCCACCCACTCT
GTTCCTAAAATCAGTTCCAGGAGAGTCATTCTTGGTAGGTGCAGACATGA
AGGTACTGGCGTAATCGCAAACACTAGCTAAACAGGCATTCTGGCTATGA
CGGCCCTATGAGCCTATTCTCTCAGCCCTATCTAGATCTCCACCATCTGT
ATGGAGGGATAAGGGGCGCTAATATGTTTTTCTAAACCAGCTACATGTGT
ATAGTCCTATTCCTAGGAATGCCAGCAACACTAGTTTCAAGATTCCTTGG
GTTGAGACTTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_e02.g1 MSMg01no280_e02.g1 CHROMAT_FILE:
MSMg01no280_e02.g1 PHD_FILE: MSMg01no280_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:03 2005
         (284 letters)



>mm_chr9_67088035_67088716
          Length = 682

 Score =  507 bits (262), Expect = e-148
 Identities = 278/284 (97%), Gaps = 2/284 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtggatgtcctgtttctcctcggaataaccagaggtacttttctcggcagttaacta 60
           |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 201 catgtggatgtcctgtttctcctcggaataaccagaggtactcttcttggcagttaacta 260

                                                                       
Query: 61  gacccactcactggttttcacccgcccccctcccccactatgtaaaatggtgctgggcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacccactcactggttttcacccgcccccctcccccactatgtaaaatggtgctgggcag 320

                                                                       
Query: 121 gcagaccgggtttgcgacttcctggtgtaaggatggggagggaggagaaactccgtgtac 180
           |||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gcagaccgggt--gcgacttcctggtgtaaggatggggagggaggagaaactctgtgtac 378

                                                                       
Query: 181 cctgcttagctccactgcacagtcaccgctggatgcaggacgcaggggctgagcggccgc 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 379 cctgcttagctccactgcacagtcaccgctggatgcaggacgcaggggatgagcggccgc 438

                                                       
Query: 241 cagtgaacactgacctttggctttgctcttggcttcagctgctc 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cagtgaacactgacctttggctttgctcttggcttcagctgctc 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 682
Length adjustment: 9
Effective length of query: 275
Effective length of database: 673
Effective search space:   185075
Effective search space used:   185075
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)