Query= MSMg01no280_l11.b1 MSMg01no280_l11.b1 CHROMAT_FILE:
MSMg01no280_l11.b1 PHD_FILE: MSMg01no280_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:37 2005
(686 letters)
>mm_chr9_93360691_93361776
Length = 1086
Score = 1108 bits (573), Expect = 0.0
Identities = 658/689 (95%), Gaps = 7/689 (1%)
Strand = Plus / Plus
Query: 4 ggaattcataagcttttccactttatgtgaacttcatttgaatcatagttataatttcat 63
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 204 ggaattcataagcttttctactttatgtgaacttcatttgaatcatagttatcatttcat 263
Query: 64 gttcatacattgaagctgaaatcttagaaaaagactaagaattattgcagttgtatgtga 123
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 264 gttcatactttgaagctgaaatcttagaaaaagactaagaattattgcagaagtatgtga 323
Query: 124 actaaaaaacatttttcatgctatcatgtgggatggaactaaacaatatttcacttacag 183
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 324 actaaaaaacatttttcatgctatcatttgagatggaactaaacaatatttcacttacag 383
Query: 184 gataccataaaacctatgtatattagtggactccaaatacattgtgagaactgaatatat 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gataccataaaacctatgtatattagtggactccaaatacattgtgagaactgaatatac 443
Query: 244 tataaaatgcttaaatcagggtaaat--gtttttctcttatattgtttattattttgata 301
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 tataaaatgcttaaatcagggtaaatatgtttttctcttatattgtttattattttgata 503
Query: 302 aaaaatgttcaaaact----tctcttagctttctgaaatataaaggacaacatattattc 357
|||| | ||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 504 aaaa-tattcaaaactgttttctcttagctttctgaaatataaaggacaacatattaatc 562
Query: 358 actagttagcattatagagaagggttcactgaacttgctcttatctgcttgtaatttagt 417
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 563 actagttagcataatagagaagggttcactgaacttgctcttatctgcatgtaatttagt 622
Query: 418 ttttattatttacctatcttcacaaacatgccaacatcccaagccaatggtaaccaatat 477
||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 623 gtttattattcacctatctacacaaacacaccaacatcccaagccaatggtaaccagtat 682
Query: 478 ctactgttcatttctataaatccattttctttgtatttcgtgcatgaattagtgctgctg 537
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 683 ctactgttcatttctataaatccattttctttgtatttagtgcatgaattggtgctgctg 742
Query: 538 caaatgtctttttaatttcggattattacactgagcatgtggacttccatccatttccat 597
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 caaatgtttttttaatgtcggattattacactgagcatgtggacttccatccatttccat 802
Query: 598 atattgtcttgcacagggcagactttagttcatttatggttgaacaatattccacttatt 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ctattgtcttgcacagggcagactttagttcatttatggttgaacaatattccacttatt 862
Query: 658 gcagtgatgtaatagaatatgcttctaaa 686
||| |||||||||||||||||||||||||
Sbjct: 863 gcactgatgtaatagaatatgcttctaaa 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_l11.g1 MSMg01no280_l11.g1 CHROMAT_FILE:
MSMg01no280_l11.g1 PHD_FILE: MSMg01no280_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:37 2005
(592 letters)
>mm_chr9_93463519_93464510
Length = 992
Score = 1011 bits (523), Expect = 0.0
Identities = 541/547 (98%), Gaps = 2/547 (0%)
Strand = Plus / Minus
Query: 1 tgaagttataaatttccttttattttgttcttaattgtatgtttaattggtttggtgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tgaagttataaatttccttttattttgttcttaattgtatgtttaattggtttggtgact 487
Query: 61 ggtctctggcttcagttgagttcaagaaacttctgttgctcagtgaatgtttcagccttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ggtctctggcttcagttgagttcaagaaacttctgttgctcagtgaatgtttcagccttt 427
Query: 121 ctttattgctgctaataaagtcagcatggctaaccagctacattgaagccttcatgttct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctttattgctgctaataaagtcagcatggctaaccagctacattgaagccttcatgttcc 367
Query: 181 tgtcactatgaagtcatgtaaaatacaatttttaaatgttgaattttagttttagaagtc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 366 tgtcactatgaagtcatgtaaaatacaatttttaaatgttgaattttagttttagaagcc 307
Query: 241 ttcacgttttgttttgtttttaacacttagctgggcttttcctcgatataaatactgcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttcacgttttgttttgtttttaacacttagctgggcttttcctcgatataaatactgcct 247
Query: 301 tataattgataat-caaaacaaaatttttagtctctcatgtgaagatgattttttactag 359
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tataattgat-atacaaaacaaaatttttagtctctcatgtgaagatgattttttactag 188
Query: 360 cttgatcgcatgtggatctggtaaaggcaaacacagctttgatgacgtcatgaacataac 419
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cttgatcgcatgtgtatctggtaaaggcaaacacagctttgatgacgtcatgaacataac 128
Query: 420 agccatgtcatgtatgcaagacagaatttcacagttctcatttccatttcctagctctta 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ggccatgtcatgtatgcaagacagaatttcacagttctcatttccatttcctagctctta 68
Query: 480 cactttttttctgccccaatttctatgatgttccttaagtcctgggaaattggatttgcg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 cactttttttctgccccaatttctatgatgttccttaagtcctgggaaattggatttgcg 8
Query: 540 ataaatg 546
|||||||
Sbjct: 7 ataaatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
