BAC Information

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BAC

Clone NameMSMg01-289K17
Chromosome9 (Build37)
Map Location 31,582,380 - 31,746,980
singlet/doubletdoublet
Overlap geneEG666576, Barx2, LOC100042266
Upstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
Downstream geneTpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289K17.T7 (MSMg01no289_k17.b1)MSMg01-289K17.TJ (MSMg01no289_k17.g1)
ACCAG419159AG419160
length735743
length of high quality
(start - end)
217 (423 - 639)236 (126 - 361)
definitionCHROMAT_FILE: MSMg01no289_k17.b1 PHD_FILE: MSMg01no289_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:01 2005CHROMAT_FILE: MSMg01no289_k17.g1 PHD_FILE: MSMg01no289_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,582,380 - 31,582,596)(31,746,745 - 31,746,980)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAAGAGACCGCGGATTCCT
TGAATTTCTCAAAATATTTTCCTATCACTGTCTACAGTTAGTCTATCATG
TGGCAAGATTCCACTAGAACGTTTCAGCACTAGATGAAAAATGATTACAG
TTACAGATGTCCCTGTTAGTGCACTGAACCCAGAATTACCACAGACTGAA
CGCCTATAAATGATCTGGCCTAAATCTAAATTCTTATTTCTGTTCTCCAT
CCTCATTCAGCCCCTTATCATTTATATGTCCAGTTTTTTTTTTACCTTAA
AAGTCCACATATTATTATTATTTTGTTCCATTTCTCCAGACTGACTTTGT
TTTTTCCCCTATGCCATATTCTGTGACCTGACTTTAGTTCTATGTCATAT
TTCCCCCCCCCAGGTGACTAAAGTAGCCAATGAGGACAATTGCCTATTAC
CATTAACAACTTTTAATAAGACAACTACAGAAATTTCATCCAGAAAGGAA
CTATTTTAAGGCACACACAAGAAAGGTATATTTCTTCTGATGAGTCTTTG
TGTATTGACATGCTCTTAAGTATCTTCACACTAATTCTCCATGTCTCACT
GGTTCCCAGTCAGTGTTGACCTGGGAATCCTCCTGAGTCTACGCAGTCTT
CCTCTCTTTGAGAGGCGCTTTTTTGTTTTACCTGCATCCGCCTGAGGCTA
CTATAGGTAGCTTATAAACTAGCTGATTGTAGGAA
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTAACAAAGGGGCTAACTGGGAGATAAAA
ATCACTGAGAATATGTGATCCCTATTCAGTTGTACCTGGAATGAGAGATA
GGTGATGGGTGAGACCTTTCCCAAGGTACCTGAGATCACCAAGATGTCTC
AGACACCCTCAAGCATTCAGGAGCATCAGAACAAACAGGAAGAATCCCCT
GGAGTTTGAGTAATGCCTGTGTCTACAGCCCTGCTAAGCTTAGTCCAGCA
GGGCCCAGCAGGACCCACAGCACGTGTGCTTAGCACAGTTGAGAAGAGTT
TTATAGGTTATTTTTTACACCCCGCCCCACCTTAGCCTACTTTGTTCTTG
CCTTCCAATGCCCCCCTGCCTGACTCTGAACAGGCAAGGAAGCAGATTTT
CTTCTAGATAACACTAGCTTGTCTCAGGTTTCAGCATGCTAGAAAGAGGG
GGATGGAATGGGAAGAGAGGAAAGGAGAGGAGAACGAGAGAACTAAATAT
AAGAGACCCAAGGTAGCTCCTATCTGAACGTTCTGTCTTGGCATACTGTC
TCTCTCCATCTGACTCAGAAAGAACCTTGCAGGACCAAGATTATGTCCTT
AGCTTATACCCAACTGAGTGACGATTTGACTGTATCCGTAAAAATCTCTT
TATCATTTGACCGCAGGAAAGATGTCTCACTACTATCGCAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_k17.b1 MSMg01no289_k17.b1 CHROMAT_FILE:
MSMg01no289_k17.b1 PHD_FILE: MSMg01no289_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:01 2005
         (217 letters)



>mm_chr9_31582180_31582796
          Length = 617

 Score =  412 bits (213), Expect = e-120
 Identities = 216/217 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagccaatgaggacaattgcctattaccattaacaacttttaataagacaactacagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtagccaatgaggacaattgcctattaccattaacaacttttaataagacaactacagaa 260

                                                                       
Query: 61  atttcatccagaaaggaactattttaaggcacacacaagaaaggtatatttcttctgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcatccagaaaggaactattttaaggcacacacaagaaaggtatatttcttctgatg 320

                                                                       
Query: 121 agtctttgtgtattgacatgctcttaagtatcttcacactaattctccatgtctcactgg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 agtctttgtgtattgacatgctcttaagtatcttcacactaattctccatgtttcactgg 380

                                                
Query: 181 ttcccagtcagtgttgacctgggaatcctcctgagtc 217
           |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcccagtcagtgttgacctgggaatcctcctgagtc 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no289_k17.g1 MSMg01no289_k17.g1 CHROMAT_FILE:
MSMg01no289_k17.g1 PHD_FILE: MSMg01no289_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:02 2005
         (236 letters)



>mm_chr9_31746545_31747180
          Length = 636

 Score =  433 bits (224), Expect = e-126
 Identities = 233/236 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagttgtacctggaatgagagataggtgatgggtgagacctttcccaaggtacctgaga 60
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 436 tcagttgtacctggaatgagagataagtgatgggtgagacctttcccaaggtacctgata 377

                                                                       
Query: 61  tcaccaagatgtctcagacaccctcaagcattcaggagcatcagaacaaacaggaagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcaccaagatgtctcagacaccctcaagcattcaggagcatcagaacaaacaggaagaat 317

                                                                       
Query: 121 cccctggagtttgagtaatgcctgtgtctacagccctgctaagcttagtccagcagggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cccctggagtttgagtaatgcctgtgtctacagccctgctaagcttagtccagcagggcc 257

                                                                   
Query: 181 cagcaggacccacagcacgtgtgcttagcacagttgagaagagttttataggttat 236
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tagcaggacccacagcacgtgtgcttagcacagttgagaagagttttataggttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)