BAC Information

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BAC

Clone NameMSMg01-290D09
Chromosome9 (Build37)
Map Location 56,673,473 - 56,673,755
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1
Downstream geneOdf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290D09.T7 (MSMg01no290_d09.b1)MSMg01-290D09.TJ (MSMg01no290_d09.g1)
ACCAG419554AG419555
length718712
length of high quality
(start - end)
450 (50 - 499)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no290_d09.b1 PHD_FILE: MSMg01no290_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:41 2005CHROMAT_FILE: MSMg01no290_d09.g1 PHD_FILE: MSMg01no290_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAATCC
GCGGAATTCAAGGCCAGTCTGCCCTATAGATGAGTTCCAGAACAGCCAAA
GATACACTTAGAAACTTTCTATGAAAACAAAAAACAAAAAGAAAAAAATA
AAACAAAAATCAATAATGGGTACCATAGTACCATAGTGACTTGATAAAAC
ATGTTCCCCATAGGTTCATTTATTTGAATGTCTACTCACCAGAGAGTGGA
ATTGTTTGAAAGGACCCGGGGATTAGGTGTGGCCTTGCTGGAGGACGTGT
ATAACTGGTGCTGGGCTCTGAGTTTTCTATGTCTGATCCAGCACATCAGG
ACGTAGCTCTGGCTCTGGTACTAGGCTCTCCTACATGATAATGGACCAAG
CCCCTGACATGAAGCAAGCTGCCAATTAAATACTTTCTTTTATAAAAGTT
GCCTTGAAGCCGAGCAGTGGTAGCCCATGCCTTTAGTCCCAGGACTTGGG
AGGCAGAGCCAGGTGGATTTCTGAGTTCGAGGCCAACTTGGTCTACAGAG
TGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTATCTAAAAAAAC
AAAACACCAAAACAAAACAAAAATGTTGCCCTTGGTCTCTTACAGCAATA
AAGGCAAACAGCGACTAAGACAACTTACTTTCACTTCAGGGTTCCTGCTT
TCCCTCTTGAATTGGAAA
CTCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTGCCCAATTGCAGCTTGATCA
ATCGGGAGCCGCGAGCGTGGCGCCCGCGGCTTCTGGAGCCACAGCTCCCC
TGAGCCCCATCACTCAGCACTACGGTAATAAAGTGGCCGGGCCTGGAAAA
ACGCTATGAGGCTCCAGAGAGCTCAGTCTCATCCCGCTGGATTATAACCC
TGTTATTGGCACCCCTGGGGCTTGTTCTGTCTCCTTCAACCCCAGCTTCA
TAGATGAAACTTGCCAGGGGGGCCAAAGGGGTGAGGCAGCCTGGCAGGCA
GCAGCAGGGGTGTTATATACCCGATCTCCTCCTTCCCCCAGTCCAGCATC
CTCTGAGGCCTCAGCCACCACCCACCCTCAAGGGGCTGGTGCAGAGGAGA
GACAAAAAGAGCCTGCAATCCCAGAAGGCTCACATATAGTCCATACTAGC
CAAAAGCCCAAGAAACAGCAGGCTTGGTGTTCAGTGGCAGACACACAGAA
CACAGAAATTACCTGAGTGGCTTCAAAGGAGGCGGTGAAGATGAGGAGAG
ACAGCGCCAGGGATGATAACATCCTTTCCACAACTCTTGAGGGATCCCCC
TTGTNCCCATGCCCCCGTGAAAAGACGAGGGCATCCTATGCAGCAGGTGC
CCCTCTGTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_d09.g1 MSMg01no290_d09.g1 CHROMAT_FILE:
MSMg01no290_d09.g1 PHD_FILE: MSMg01no290_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:41 2005
         (283 letters)



>mm_chr9_56673273_56673955
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgcccaattgcagcttgatcaatcgggagccgcgagcgtggcgcccgcggcttctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 201 ctctgcccaattgcagcttgatcaatcgggagccgcgagcgtggcgggtgcggcttctgg 260

                                                                       
Query: 61  agccacagctcccctgagccccatcactcagcactacggtaataaagtggccgggcctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccacagctcccctgagccccatcactcagcactacggtaataaagtggccgggcctgg 320

                                                                       
Query: 121 aaaaacgctatgaggctccagagagctcagtctcatcccgctggattataaccctgttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaacgctatgaggctccagagagctcagtctcatcccgctggattataaccctgttat 380

                                                                       
Query: 181 tggcacccctggggcttgttctgtctccttcaaccccagcttcatagatgaaacttgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcacccctggggcttgttctgtctccttcaaccccagcttcatagatgaaacttgcca 440

                                                      
Query: 241 ggggggccaaaggggtgaggcagcctggcaggcagcagcaggg 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggggccaaaggggtgaggcagcctggcaggcagcagcaggg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)