BAC Information

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BAC

Clone NameMSMg01-290K11
Chromosome9 (Build37)
Map Location 38,071,659 - 38,072,200
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143
Downstream geneOlfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290K11.T7 (MSMg01no290_k11.b1)MSMg01-290K11.TJ (MSMg01no290_k11.g1)
ACCAG419872AG419873
length744743
length of high quality
(start - end)		698 (45 - 742)667 (77 - 743)
definitionCHROMAT_FILE: MSMg01no290_k11.b1 PHD_FILE: MSMg01no290_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:16 2005CHROMAT_FILE: MSMg01no290_k11.g1 PHD_FILE: MSMg01no290_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTTGTCTCTCTCTATCTCTCTGTCTCTGTCTCTCTCTCTCTCCC
TGTGTATGTGTGTGTTCCCCTATCTTGTTTCTTTCTCTGCACTGTGCTCT
TAAGTCTCCTCTCCTTTCTGTTCTTATGAGAGTTGGGAATATCCTATCTT
TGACTCATTCTGTCAAATCTTTCTCTGATTAAACCTGTCATCCCCCCAAT
TAGATGTCACTTTCAAACATGGCTGCTTCCTTCTATAAACTAGCCTTACT
TTCATTGTTTGGAATTAAAGGCATGAACTAAGGGTTTATCTGTATACCAG
TTAGATCATACTGTAATTCAGAGCATATGTACTTTCCACCCTGATCACAT
AGACCTAGAAGTTATTTAGATGTGATTCCTTGGCAGATGAATTGTGTTGC
TAGATTAAAATTCCTCTAAAAAGTGATTATTGGGATAGTAGTATTTGGTG
GATTAGTAGGACAAAGATACTACAAATGGAATATTGGAAATAATCTAGTC
ACTTTAACTATGGTAAGGAGAGTAAGACCAATACAAGAAAAGGAAGAGGT
GAGAAAATACAATGAATGATGTTTTAAAAATCTATAAACAATTAAAAATG
TATCTAANATTACAAAATTGACCTACACACACACATAATAAGCATACACA
TATACATACCTACATGCATATGCATATACATGTAGGTGACATGG

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCACTAAACCTCATCTGGTCCTG
AATTTTATTTTGGCTGGGAGACTTCTAATGACTTCTTCTATTTCTTTAGT
GTTATGGGACTGCTTAGATGGTTTATCTGATCCTTATTTAAATTTGGTAC
CTGGTATCTGTCTAGAAAATTGTCCATTTCATCCAGATTTTCCAGTTCTG
TTAAGTATAGTCTTTGTGGAAGGATCTGATGATTTTTTGAATTTCCACAG
TTTCTGTTGTTATGTCTCCCTTTTCATTTCTGATTTTGTTAATTTGGATA
TTGTCTCTGTGCTGTCTGCTTTGTCTGACTAAGGGTTTTTCTATCTTGTT
GATTTTCTCAAAGAACCAGCTCCTGGTTTTGTTGACTCGTTGTATAGTTC
TTTTTGTTTCTACTTGGTTGATTTCAGCCCTGAGACTGATTATTTCCTGC
TGTCTGTTCCTTTTGGATGTATTTGCTTCTTTTTGTTCTAGAGTTTTCAG
GTGTGTTGTTAAGCTGCTAGTGTATGTTCTCTTCAGTTTCTTTTTGGAGG
CACTCAGAGCTATGGGGTTTCCTCTTAGCACTTCTTTCATTGTGTCCCAT
AAGTTTGGGTATGTTGTGACTTCATCTTCATTAAATTCTATGCATTTTAC
TTTATGTTCTTGTTTGTCCATCTATTAATGATTTTATAATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_k11.b1 MSMg01no290_k11.b1 CHROMAT_FILE:
MSMg01no290_k11.b1 PHD_FILE: MSMg01no290_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:16 2005
         (698 letters)



>mm_chr9_38071102_38072200
          Length = 1099

 Score =  988 bits (511), Expect = 0.0
 Identities = 535/544 (98%), Gaps = 4/544 (0%)
 Strand = Plus / Minus

                                                                        
Query: 157  tgactcattctgtcaaatctttctctgattaaacctgtcatccccccaattagatgtcac 216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 tgactcattctgtcaaatctttctctgattaaacctgtcatccccccaattagatgtcac 1040

                                                                        
Query: 217  tttcaaacatggctgcttccttctataaactagccttactttcattgtttggaattaaag 276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 tttcaaacatggctgcttccttctataaactagccttactttcattgtttggaattaaag 980

                                                                        
Query: 277  gcatgaactaagggtttatctgtataccagttagatcatactgtaattcagagcatatgt 336
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979  gcgtgaactaagggtttatctgtataccagttagatcatactgtaattcagagcatatgt 920

                                                                        
Query: 337  actttccaccctgatcacatagacctagaagttatttagatgtgattccttggcagatga 396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919  actttccaccctgatcacatagacctagaagttatttagatgtgattccttggcagatga 860

                                                                        
Query: 397  attgtgttgctagattaaaattcctcta-aaaagtgattattgggatagtagtatttggt 455
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 859  attgtgttgctagattaaaattcctctacaaaagtgattattgggatagtagtatttggt 800

                                                                        
Query: 456  ggattagtaggacaaagatactacaaatggaatattggaaataatctagtcactttaact 515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799  ggattagtaggacaaagatactacaaatggaatattggaaataatctagtcactttaact 740

                                                                        
Query: 516  atggtaaggagagtaagaccaatacaagaaaaggaagaggtgagaaaatacaatgaatga 575
            ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 739  atggtgaggagagtaagaccaatacaagaaaaggaagaggtgggaaaatacaatgaatga 680

                                                                        
Query: 576  tgttttaaaaatctataaacaattaaaaa-tgtatctaanattacaaaattgacctacac 634
            ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 679  tgttttaaaaatctataaacaattaaaaaatgtatctaaaattacaaaattgacctacac 620

                                                                        
Query: 635  acacacataataagcatacacatatacatacctacatgcatatgcatatacatgtaggtg 694
            |||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 619  acaca--taataagcatacacatatacatacctatatgcatatgcatatacatgtaggtg 562

                
Query: 695  acat 698
            ||||
Sbjct: 561  acat 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1099
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1089
Effective search space:   749232
Effective search space used:   749232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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