BAC Information

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BAC

Clone NameMSMg01-290K18
Chromosome9 (Build37)
Map Location 18,102,780 - 18,103,084
singlet/doubletsinglet
Overlap geneChordc1
Upstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554, LOC665567
Downstream geneNaalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290K18.T7 (MSMg01no290_k18.b1)MSMg01-290K18.TJ (MSMg01no290_k18.g1)
ACCAG419886AG419887
length756759
length of high quality
(start - end)
689 (46 - 734)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no290_k18.b1 PHD_FILE: MSMg01no290_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:17 2005CHROMAT_FILE: MSMg01no290_k18.g1 PHD_FILE: MSMg01no290_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:18 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTATTCTTTTTTTTAATGGGGTTATTTGATTTTATGGAGT
CCACCTTATGAGTTCTTTATATATGTTGGATATTAGTCCCTTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGACCATTTTGTTATT
GACAGTGTCTTGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAG
GTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTACTGTTCTGT
TCAGGAATTTTTCCCCTGTACCCATATCTTTGAGGCTTTTCCCTACTTTC
TCCTCTGTAAGTTTCAGTGTCTCTGCTTTTTTTTTTTTTAAGATTTATTT
ATTTATTATATGTAAGTATACTGTAGCTGTCTTCAGACACACCAGAAGAG
GGAGTCAGATCTCAAAACGGATGATTGTGAGCCACTATGTGGTTGCCGGA
ATTTGAACTCTGAACCTTCAGAAGAGCAGTCGGGTGCTCTTACCCACTGA
GCCATCTCACCAGCCCCGTGTCTCTGGTTTTATGTGGAGTTCCTTAATTC
ACTTAGATTTGACCTAAGTACAAGGAGATAGGAATGGATCAATTCGCATT
CTTCTACATGATAACTGCCAGTTGTGCCAGTACCATTTGTTGNAAATGCT
ATCTTTTTTCCACTGAATGGTTTTTGCTCCCTTGTCAAAATCTAGTGACT
ATACGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCACGGAAGTCATTACACTGGA
CTGATGATACAAGCGAGGGGCCAGAAGCAAAGCCAGCCTTGGGCTCTCCA
TCCCTAGTGTTTGAGGTGGAGCAGGAGGAACTGGCCCCATCCTCAATGGC
CCAGTAGGGGCAGGAGAGGACTGGTGTCGGCATGGATCCCCTCTCCCCTG
TTATGCGGGCACCTCTGCTGTACTGATATCAATAATATATTCTGTCTGCC
GGGGGTGGGGGGGCGAAGAAAAGAAAAAGAGAAAAAGAAAATCAGGGGCT
GCTTTTAAGAATAGTATTTATTTTTTTGACCACCACCAAAAGTTTTTTAA
CACCATCTATTGGATGAGGGACTGTAACTCACTGGAAGAGCTGTTGCCAG
TGTACACAGGACCCCATTTGAATGCCAACATCCTCTCTCTAATTCATGTA
TTTAAAGGGTCTGAGGAGTAAGGGGATTTACCTGGGGGAAAATCTACTAA
GTCATAATTATAGTCCTTTAGTTTTTATTTTATTTTATTTTTTTAAAGAT
GTATTTATTTATCATACGTAAGTACACTGTAGCTGTCTTCAGATGCACCA
GAAGAGGGCATCAGATCTCTCATTACGGATGGTTGTGACCCACCATGTGG
TTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTACTCTTAA
CCGCTGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_k18.g1 MSMg01no290_k18.g1 CHROMAT_FILE:
MSMg01no290_k18.g1 PHD_FILE: MSMg01no290_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:18 2005
         (292 letters)



>mm_chr9_18102646_18103337
          Length = 692

 Score =  509 bits (263), Expect = e-148
 Identities = 289/305 (94%), Gaps = 13/305 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcacggaagtcattacactggactgatgatacaagcgaggggccagaagcaaagccag 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 cttcacggaagtcattacactggactgatgatacaagcaaggggccagaagcaaagccag 380

                                                                       
Query: 61  ccttgggctctccatccctagtgtttgaggtggagcaggaggaactggccccatcctcaa 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccttgggctctccatccccagtgtttgaggtggagcaggaggaactggccccatcctcaa 320

                                                                       
Query: 121 tggcccagtaggggcaggagaggactggtgtcggcatggatcccctctcccctgttatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tggcccagtaggggcaggagaggactggtgtcggcatggatcccctctcccctgttatgc 260

                                                                       
Query: 181 gggcacctctgctgtactgatatcaataatatattctgtctgccgggggt--------gg 232
           |||||||||||||||||||||||||||||||||||||||||||||||||         ||
Sbjct: 259 gggcacctctgctgtactgatatcaataatatattctgtctgccggggggaggggggcgg 200

                                                                       
Query: 233 ggggg-----cgaagaaaagaaaaagagaaaaagaaaatcaggggctgcttttaagaata 287
           |||||     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggggggtgggcgaagaaaagaaaaagagaaaaagaaaatcaggggctgcttttaagaata 140

                
Query: 288 gtatt 292
           |||||
Sbjct: 139 gtatt 135


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)