BAC Information

Click to search

BAC

Clone NameMSMg01-291E22
Chromosome9 (Build37)
Map Location 94,741,248 - 94,741,559
singlet/doubletsinglet
Overlap geneSlc9a9
Upstream geneLOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291E22.T7 (MSMg01no291_e22.b1)MSMg01-291E22.TJ (MSMg01no291_e22.g1)
ACCAG420342AG420343
length758761
length of high quality
(start - end)
320 (38 - 357)348 (375 - 722)
definitionCHROMAT_FILE: MSMg01no291_e22.b1 PHD_FILE: MSMg01no291_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:04 2005CHROMAT_FILE: MSMg01no291_e22.g1 PHD_FILE: MSMg01no291_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGA
TGGAACCCCTATGTTTGTGTTTATCAGTTTTGGGGTGCTTCTTCTGCATG
CTGACTCCTGAAGGCCCGCTGTTTGGATGGGTAGAGTAAAAGCATTATTG
ATTTGCAGCTAGCTAAAAGTTGGCTGAAGTTAATTAAGACATTTTGCACG
CATAGATGTTAGTGTCCTGCAACAGCACAGTCCAGAAACCTAAGCAATGC
AAAGCCCGGCACACTCGTCTAGTTCTCATTGGCTGGCTGTAAAATCTCAG
GTTATCATCAAATTCCTTTGCACCTCAATTATTTTACTAAAACGTGGCTC
TTCNCNCTCNGACACCANGCATCCCATGAACGGAAACACTGCGTGTGGAA
GCTACCCCCCCCCTTTGAAAAAAAACACAATATAGATCCGAGCTGGTATT
TTTATTTCTGAGTAAATTTGCTGGAGAATAGAATCTGGGTTTATATGAGG
GTGTTTTATAGACTAAGGTTTATATAGAGGCTTTTAAACTGATGCTATCA
CAGTATGCTTAACATGGAATTGGATAGAGCGAGAGAATGCATTCGAGCGC
TGTTAAATAACACTGTGCAGGCTTGCAGCAGATCACATAAAGAAATTGGT
TGGCCTGCCAGCACTATCTCGAAGCCTGATGGCTTCAGGGGGAAATGCTG
TACGCTAATATGCTCAGACTTCCTTTGAGATGCAATATCTTTCCCTTGGA
GTTTCAGG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGAGAAGCACC
TGAAAAAATGTTTCACCTCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGTTTATATATCCACAACATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACCACGCCCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTA
GCCCAAAACCTAGAATATCCAAGATATTAGATACAATTTCCTAAACACAT
GAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTA
GAAGTGGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_e22.b1 MSMg01no291_e22.b1 CHROMAT_FILE:
MSMg01no291_e22.b1 PHD_FILE: MSMg01no291_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:04 2005
         (320 letters)



>mm_chr9_94741044_94741763
          Length = 720

 Score =  557 bits (288), Expect = e-163
 Identities = 306/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagatggaacccctatgtttgtgtttatcagttttggggtgcttcttctgcatgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcagatggaacccctatgtttgtgtttatcagttttggggtgcttcttctgcatgc 457

                                                                       
Query: 65  tgactcctgaaggcccgctgtttggatgggtagagtaaaagcattattgatttgcagcta 124
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgactcctgaaggggtgctgtttggatgggtagagtaaaagcattattgatttgcagcta 397

                                                                       
Query: 125 gctaaaagttggctgaagttaattaagacattttgcacgcatagatgttagtgtcctgca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gctaaaagttggctgaagttaattaagacattttgcacgcatagatgttagtgtcctgca 337

                                                                       
Query: 185 acagcacagtccagaaacctaagcaatgcaaagcccggcacactcgtctagttctcattg 244
           | |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 336 agagcacagtccagaaacctaagcaatgcaaagcccagcacactagtctagttctcattg 277

                                                                       
Query: 245 gctggctgtaaaatctcaggttatcatcaaattcctttgcacctcaattattttactaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gctggctgtaaaatctcaggttatcatcaaattcctttgcacctcaattattttactaaa 217

                       
Query: 305 acgtggctcttc 316
           ||||||||||||
Sbjct: 216 acgtggctcttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)