BAC Information

Click to search

BAC

Clone NameMSMg01-292M19
Chromosome9 (Build37)
Map Location 11,717,031 - 11,717,397
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665178
Downstream geneLOC100039989, LOC622505, LOC100039680
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292M19.T7 (MSMg01no292_m19.b1)MSMg01-292M19.TJ (MSMg01no292_m19.g1)
ACCAG421421AG421422
length789778
length of high quality
(start - end)		372 (46 - 417)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no292_m19.b1 PHD_FILE: MSMg01no292_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:58 2005CHROMAT_FILE: MSMg01no292_m19.g1 PHD_FILE: MSMg01no292_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCGAAGGTGACAAGCTGTATGTCTCCGGCGATACCTCAGCAAAT
ACAGAGTTCCTGCATTCTATGTCCATACAGTATATATTGCAGCTTTGCAG
TTCTTAGAGAGTATAAAGAGCTGGAAGTAGTTATGTGTTTTAAAAATAAT
CAAATATATACAGTGCAACTTCTTATATTGCCCAAATAGATATAACTAAA
TTAAGTGGGACTCTTAACAAAAGCAGTCCAACTTTAGCATATTCTAAGGC
ATCTTTTATTGAGATAATTTTCTTTTACTCTACAGATGTCATCCGTGTAT
GGGCCATCGACACTTTCATTACTGGCAGGATTCCGTGATCTCTGAAATCT
GTAAGATGATACACAACCCCCCCACTTGTAGTTTATTAACTTTTGGACAT
TCTGACATATGTGTGAATATCTTCTATGAAATCCTGCCTAAATACATGGT
ATTGTTACATTTTGTTTTAGACATTCTCCCCCTCAGAATCACTGAAGTAA
AGTCACAGTAAGGCTTGACTGAGTATCCCATGATTCCTTGTAACCGTGAA
TGTGCTGGTTAATAAAGATTCCCCTTTTGAGACTTAAGTTTATTGGAAAA
TGGCGACCCATTTGTATTACGCTCGTTGTTCCCTTAGCTTGTTCTACAAG
TTTCCTTTTCATTCTTAACACATCTTTGTATTTTAAAAATCCCTCGGTTT
CATGATATCCCCCTTATTACTTTGTGTCTTTTCTACCCC

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACTTGAGGAATACCAAATGTCTG
AGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAA
ATCAAAGCAACCCTGAGATTCCACCTCACACCAGTCAGAATCGCTAAGAT
CAAATCTCATGTGACAGTAGATGCTGCCGAGGATGTGGAGAAAGAGAAAC
ACTCCTCCGTTCTTGGTGGGACTGCAGGCTTGTACAACCACTCTGGAAAT
GAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTATAAGATCCA
GCAATACCTCTCCTGTTTATATATCCACACCCACCCCCCAACTGGTAAGA
AGTACACATGCTCCACTACGCCCATAGCAGAATAATATATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACATAAAAT
GTGGTACATTTACACAATGGAGTACTACTTAGCTATTAAAAACAATTAAT
TTATGAAATTCCTAGGCAAATGTATGGACCTAGAGGACATCTTCCTGAGT
GAGGTAACCCAATCCAAAAAGAACTCACATTATAGGTACTCACTGAAAAC
TGGGATATCAGCCCGAATCTTATTATATCCCGGATAGAAGATTTATTCTG
GGGCACCCCTGAAACTCTTTAAAAATGGAGAACCAACGGTGGGCCCTTTG
CTCCCCCCTATAAATGGGAATGCACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_m19.b1 MSMg01no292_m19.b1 CHROMAT_FILE:
MSMg01no292_m19.b1 PHD_FILE: MSMg01no292_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:58 2005
         (372 letters)



>mm_chr9_11716827_11717598
          Length = 772

 Score =  679 bits (351), Expect = 0.0
 Identities = 363/367 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcgaaggtgacaagctgtatgtctccggcgatacctcagcaaatacagagttc 64
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 571 gaattcagcgaaggtgataagctgtatgtctccggtgatacctcagcaaatacagagttc 512

                                                                       
Query: 65  ctgcattctatgtccatacagtatatattgcagctttgcagttcttagagagtataaaga 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 511 ctgcattctatgtccatacagtatatattacagctttgcagttcttagagagtataaaga 452

                                                                       
Query: 125 gctggaagtagttatgtgttttaaaaataatcaaatatatacagtgcaacttcttatatt 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 451 gctggaagtagttatgtgttttaaaaataatcaaatatgtacagtgcaacttcttatatt 392

                                                                       
Query: 185 gcccaaatagatataactaaattaagtgggactcttaacaaaagcagtccaactttagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gcccaaatagatataactaaattaagtgggactcttaacaaaagcagtccaactttagca 332

                                                                       
Query: 245 tattctaaggcatcttttattgagataattttcttttactctacagatgtcatccgtgta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tattctaaggcatcttttattgagataattttcttttactctacagatgtcatccgtgta 272

                                                                       
Query: 305 tgggccatcgacactttcattactggcaggattccgtgatctctgaaatctgtaagatga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgggccatcgacactttcattactggcaggattccgtgatctctgaaatctgtaagatga 212

                  
Query: 365 tacacaa 371
           |||||||
Sbjct: 211 tacacaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |