Query= MSMg01no293_n23.b1 MSMg01no293_n23.b1 CHROMAT_FILE:
MSMg01no293_n23.b1 PHD_FILE: MSMg01no293_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:24 2005
(663 letters)
>mm_chr9_22890811_22891873
Length = 1063
Score = 965 bits (499), Expect = 0.0
Identities = 550/575 (95%), Gaps = 16/575 (2%)
Strand = Plus / Minus
Query: 92 cctgggctcatttctcagtacccacaaatggcaactcaccatgactttaactccatttcc 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 cctgggctcatttctcagtacccacaaatggcaactcaccatgactttaactccatttcc 1004
Query: 152 aaagaatctgatgtcctctggcctatactcatgtgctttacataagcccaagcagataca 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 aaagaatctgatgtcctctggcctatactcatgtgctttacataagcccaagcagataca 944
Query: 212 cacacacacacacacacacacacacacacacacacacacaaaaa--atagatagat-gat 268
|||||||||||||||||||||| | | | | | | |||||||||| |||
Sbjct: 943 cacacacacacacacacacaca-----------aaatagatagatgatagatagatagat 895
Query: 269 agatacagagagagagagagagagagagagagactataaaaattggtcataggatcaatc 328
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 agat--agagagagagagagagagagagagagactataaaaattggtcataggatcaatc 837
Query: 329 aagggacattatcaacgtaaatcttgggcctccacatgtacacatgtgacaaaaaacagg 388
|||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 836 aagggacattctcaacgtaaatcttgggcctccacatgtatacatgtgacaacaaacagg 777
Query: 389 catatacatacatacacatgttatataacacgaaaaaaataggaaagaatgagtggtatt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 catatacatacatacacatgttatataacacgaaaaaaataggaaagaatgagtggtatt 717
Query: 449 ttgatgacagctcaccaggaagaagacagagcctgtgcaaatggggagggagaaaagtgg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 716 ttgatgacagctcaccaggaagaagacagagcctgtgcaaatggggagggagaaaagcgg 657
Query: 509 cacagatggtctgagggtacgaggaaagggatacagtgtgtgccccagccaaagtgggga 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cacagatggtctgagggtacgaggaaagggatacagtgtgtgccccagccaaagtgggga 597
Query: 569 cctcttccattaggcaaaggtctcagccatagaaggttgtgaaacaggggagactttggg 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cctcttccattaggcaaaggtctcagccatagaaggttgtgaaacaggggagactttggg 537
Query: 629 tcagataatgccaagaatcccctcccccatcattc 663
|||||||||||||||||||||||||||||||||||
Sbjct: 536 tcagataatgccaagaatcccctcccccatcattc 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no293_n23.g1 MSMg01no293_n23.g1 CHROMAT_FILE:
MSMg01no293_n23.g1 PHD_FILE: MSMg01no293_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:25 2005
(663 letters)
>mm_chr9_22733916_22734978
Length = 1063
Score = 1222 bits (632), Expect = 0.0
Identities = 656/664 (98%), Gaps = 3/664 (0%)
Strand = Plus / Plus
Query: 1 cctaaaaacaaatataaggcatggggagttcaaaacagattgccttcattgcagtataac 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 cctaaaaacaaatataaggcatggggagttcagaacagattgccttcattgcagtataac 260
Query: 61 tatattaaattttgcattttgagactttccaaagttgaagagaaatgatcccacatgaaa 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tatattaaattttgcattttgagagtttccaaagttgaagagaaatgatcccacatgaaa 320
Query: 121 actcagatctataccaggaaataaagaatacgagaaattgtaaatgccagaaaatagaca 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 actcagatctataccaggaaataaagaatacaagaaattgtaaatgccagaaaatagaca 380
Query: 181 aactttctcatttatttgttcaaaccaaattgtttttttgttaaaaaaaa-aacaacaac 239
||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 381 aacttcctcatttatttgttcaaaccaaattgtttttt-gttaaaaaaaacaacaacaac 439
Query: 240 aaaaaacatagttgcaatatattttaaatacataagtaaaattatgacagcacaaaggac 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaaaacatagttgcaatatattttaaatacataagtaaaattatgacagcacaaaggat 499
Query: 300 agaaaggaatttaacagtatgttattagaagtttcttgtgtataaaattatgtcataatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agaaaggaatttaacagtatgttattagaagtttcttgtgtataaaattatgtcataatg 559
Query: 360 ttgaagagtagactgtgatgtatttaaaatatttattataaatgttataacagaactaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgaagagtagactgtgatgtatttaaaatatttattataaatgttataacagaactaaa 619
Query: 420 caaccttacagagataaaatactaagaaatattcaatctaaatggcaagaaaaattaaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caaccttacagagataaaatactaagaaatattcaatctaaatggcaagaaaaattaaag 679
Query: 480 gagcaaaacatgaaaaatagaagaaaacaaatagcaagatagtagccttacacccaccta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gagcaaaacatgaaaaatagaagaaaacaaatagcaagatagtagccttacacccaccta 739
Query: 540 tacaataattacattcagcataatttatgccagactggatttctataaaccaagacctaa 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 740 tacaataattacattcagcataatttatgccagactggatttctataaacca-gacctaa 798
Query: 600 ctaaatgctgcctacaaagtataaagtgtaatataaagacacaggttaaaaatcaaagga 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ctaaatgctgcctacaaagtataaagtgtaatataaagacacaggttaaaaatcaaagga 858
Query: 660 agaa 663
||||
Sbjct: 859 agaa 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
