ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTTTAGAGTCCATGGAATCCTCTGGAAAACATTACTACAGTCTTTGT
GTATGGTTTATTTCATTAAGGTATTGTGAAAAATCCTGAAATTCTCACCT
CAGTCAGACTTGAACTTCTGTAGTCCTACATACTCCTTTCCTGCCCTGGG
TTCCCAGGAATGTCCCTGAGGCATTGTGAGGTAGGTGCAGTGCTTTCTCC
AAGTCAGAGACTCTCTTGTCCATTAAGTGACTATAGTGATCCAAGATCCA
GACAGGTGCTCTGTGACTTCTTCCAAGCTCCCTGTAGAAAGGCCTACAAT
ATGGCTCTAGCTTTATATTTGCACCACCCGCCCCGTAAGCTGGAAAGAGA
GCTACTTTCACAAGCTGACCCCAAGGAAAGAAAAAAACTCATAGGGGGCG
GCGGTAAGTTGCTAACCACCTTCCAGAAGTTACACCATACCCAGTAGTTC
TCAGTTTGTTCTTCCAATAAAGGTCTTCCTAGNCCTATTTGGCTTGTTCC
AAGTTTCCCCTGATCAAGACATTGACAAGTGGAACTGTGAGGGACTTCAT
TTACCAAGTACATTCAAGTTGGATGACCTAAGCAGAGACAGAGGTGGTTT
GCTTTTGACATCTAATGCCATATTTCATAAGGCAAGTCTACCTTACAGAC
AAGGCTTGATGAATTTTCAAGGTCAATATGCCAGACATGGATGT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGAATTTAGAATTTGGGTTCCATCCCA
AGACATATTGTTGTGCCTATGCTAATTCTTAGAAATCTAAACAAAACTGA
AATCTGAAACACATCTGGTCCCAAGCATTACTAGTTAGGGATATTCAACC
TACATTATTTGTCTAGTCAATTTCTTGACACTCCCCAACCCCTACATAAT
GGCTTCTGGTAAGAGTATCAAGGCAGTTTGAAAACTGGTGAGTGTTCAAA
TGGCTGTGAGGAAGGGGGCTTGTTAAACAGTGCTTCAGGCAGAGATGAAT
AGGAACACGCATTTAGATGGATTCCAAGCCCCCCCCCGCCTGNCAGTAAC
GTGTAGGCAACAGACTGCCCCCACAAAAACGAAGCTAAAAAAACTGCGGG
GGGGGGGCTCTGTGTGTCCCTAGACTCATCAGTGCAATGACTGGTGTTAT
CACATCAAGGGGTGTCTCTGCCCTCCAGCATCCCGCTGTGTTAAGCCAGT
ATGAAGCAGTGGCTAGAGATGGCAGAGGGAACGAAGAGAGCTGGTGCCCG
AGGTTATGCTCTTTTTTTCCTACCCTAACCTATCCAGAGACCCTTCACAC
TCAATCCCCCTCCCTAATGGCATCTTTGACCTTTCCCCGTCCCTCTCCTC
CTCATTGCCCGCGTTCTGATTGCCCTTCGTTGTCCCCCCTCN

Query= MSMg01no295_f04.b1 MSMg01no295_f04.b1 CHROMAT_FILE:
MSMg01no295_f04.b1 PHD_FILE: MSMg01no295_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:13 2005
         (318 letters)



>mm_chr9_29064886_29065603
          Length = 718

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattttagagtccatggaatcctctggaaaacattactacagtctttgtgtatg 63
           |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaatttattttagagtccgtggaatcctctggaaaacattactacagtctttgtgtatg 459

                                                                       
Query: 64  gtttatttcattaaggtattgtgaaaaatcctgaaattctcacctcagtcagacttgaac 123
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 458 gtttatttcattaaggtattgtgaaaaatcctgcaattctcacctcagtcagacttgaac 399

                                                                       
Query: 124 ttctgtagtcctacatactcctttcctgccctgggttcccaggaatgtccctgaggcatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttctgtagtcctacatactcctttcctgccctgggttcccaggaatgtccctgaggcatt 339

                                                                       
Query: 184 gtgaggtaggtgcagtgctttctccaagtcagagactctcttgtccattaagtgactata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gtgaggtaggtgcagtgctttctccaagtcagagactctcttgtccattaagtgactata 279

                                                                       
Query: 244 gtgatccaagatccagacaggtgctctgtgacttcttccaagctccctgtagaaaggcct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gtgatccaagatccagacaggtgctctgtgacttcttccaagctccctgtagaaaggcct 219

                          
Query: 304 acaatatggctctag 318
           |||||||||||||||
Sbjct: 218 acaatatggctctag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no295_f04.g1 MSMg01no295_f04.g1 CHROMAT_FILE:
MSMg01no295_f04.g1 PHD_FILE: MSMg01no295_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:13 2005
         (288 letters)



>mm_chr9_28996500_28997187
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaatttagaatttgggttccatcccaagacatattgttgtgcctatgctaattcttaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaatttagaatttgggttccatcccaagacatattgttgtgcctatgctaattcttaga 260

                                                                       
Query: 61  aatctaaacaaaactgaaatctgaaacacatctggtcccaagcattactagttagggata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctaaacaaaactgaaatctgaaacacatctggtcccaagcattactagttagggata 320

                                                                       
Query: 121 ttcaacctacattatttgtctagtcaatttcttgacactccccaacccctacataatggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaacctacattatttgtctagtcaatttcttgacactccccaacccctacataatggc 380

                                                                       
Query: 181 ttctggtaagagtatcaaggcagtttgaaaactggtgagtgttcaaatggctgtgaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctggtaagagtatcaaggcagtttgaaaactggtgagtgttcaaatggctgtgaggaa 440

                                                           
Query: 241 gggggcttgttaaacagtgcttcaggcagagatgaataggaacacgca 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggggcttgttaaacagtgcttcaggcagagatgaataggaacacgca 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)