BAC Information

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BAC

Clone NameMSMg01-295O18
Chromosome9 (Build37)
Map Location 122,971,828 - 122,971,988
singlet/doubletsinglet
Overlap geneTgm4
Upstream geneSnrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42
Downstream geneZdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295O18.T7 (MSMg01no295_o18.b1)MSMg01-295O18.TJ (MSMg01no295_o18.g1)
ACCAG423675AG423676
length759761
length of high quality
(start - end)
274 (448 - 721)194 (126 - 319)
definitionCHROMAT_FILE: MSMg01no295_o18.b1 PHD_FILE: MSMg01no295_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:59 2005CHROMAT_FILE: MSMg01no295_o18.g1 PHD_FILE: MSMg01no295_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGATGATCAAGCTATGGTGGGTACATTGGAACTACTTCCAAGTAGA
GTGAGTATGCATGCTTTGCTCTCCCGAATGGGAACCAGGCCAGCACCCGA
CCATGTCTAAGAATAAGTCAGTGCCTTGTGTCCTCAACCACACTGCTGCA
GAAATGTCAACACATGCTCTCCAAAGGGGGCCATGTCCTCAGCCTGAGAC
ATTCCTATGGGAGGTACACCTGCTGAGATGCAGACATCTTCGACAAACCC
TACACTAGGCCAGGCCTCATCATGGAAGGGCTCTGAGATGATTATGTTTG
ACAGGTCANCATAACTTACCANAACGACCCCTCTTATGCAAGCTGTCTTG
ACTCCTGCATGCATGGGAGAATAAAAGAAAAAGAGCCCAGGCGAATCTGG
CACCAGCTTCATCTCACCCCACATGGGGTAAGGCCATGGCAAGCCTTGCA
CTTCACTGGCATGTATCCAAAACTCTTTGATACATAAGACCTGATGGCAT
GGATCTCTTTTGGCAAGAGGAACTGAGGAGGAGGGTGGGAAGAGACCATT
AACTGTGCCACTGCATCTTTATAATTTTGTACTGTGCACAGGTATTCCTT
GTTTTTAAAAGTTTAAATCCATTTAGCCAAAAGTTGAGAANAGAAAAACT
GTTTGACACATCACTTCTCAGAAATACCTGTATGGAAAAAAATGATGTGC
CACTTTCCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACACTGGGGAGAAGCCCTACGAGTGTG
CCGAGTGTGGGAAAGTTCTTCCCTTCAGGAAGGCTCTTAATGAACACCAG
AGACTCCACCGCAGAGAGAAACCTTACAAATGTAACGAGTGTGGGAAAGC
CTTTACTTCTAACCGAAACCTTACAGATCATCAGAGAGTTCACACTGGAG
AGAAGCCTTATAAATGTAATGAATGTGGTAAGACATTCAGGCAGACATCT
CAGGTTATTCTACATTTGTTTTTTTTTACTAAAGAGAAACCCTATAAGGG
NAGGGAGTTTGGGTGAGTTCAAAGACCCAGATCCCAGNTNATTNAGNATN
AAAGGAAGNANNNNGAAGAGAAAAGNNCCAAACNGAAAACGGNCCGGGGN
CNGGGGCACNCGCCGNNAACCCCGGCACNNAGGAGACANNCAGCCCAGGC
CAGCCGGGCCCACANAGCGAGCCCCAGACCAGCCAAGGCCACAAAGCGAG
ACCCCGGCCCAGGGGAAAAAACGGCCANAACGCCAACAACCACCCCCCCG
AAAACCACAACGGGCACCAACACCAAAACGAAGGCGGCGCCCACAAANCC
ACACACCGAAAACAGCCCGCAGCCAAAGACCAACAAAAGGGAAACGCAGG
CCCGCACAAAACCCACCCGAAGGGCACCACCCAAGAACAAACCCAACACG
ACGCCCCACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_o18.b1 MSMg01no295_o18.b1 CHROMAT_FILE:
MSMg01no295_o18.b1 PHD_FILE: MSMg01no295_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:59 2005
         (274 letters)



>mm_chr9_122971515_122972188
          Length = 674

 Score =  306 bits (158), Expect = 1e-87
 Identities = 160/161 (99%)
 Strand = Plus / Minus

                                                                       
Query: 114 tggcaagaggaactgaggaggagggtgggaagagaccattaactgtgccactgcatcttt 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tggcaagaggaactgaggaggagggtgggaagagaccattaactgtgccactgcatcttt 415

                                                                       
Query: 174 ataattttgtactgtgcacaggtattccttgtttttaaaagtttaaatccatttagccaa 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ataattttgtactgtgcacaggtattccttgtttttaaaagtttaaatccatttagccaa 355

                                                    
Query: 234 aagttgagaanagaaaaactgtttgacacatcacttctcag 274
           |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 354 aagttgagaaaagaaaaactgtttgacacatcacttctcag 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)