BAC Information

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BAC

Clone NameMSMg01-296J05
Chromosome9 (Build37)
Map Location 110,597,150 - 110,597,432
singlet/doubletsinglet
Overlap geneCcdc12
Upstream geneC85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2
Downstream genePthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296J05.T7 (MSMg01no296_j05.b1)MSMg01-296J05.TJ (MSMg01no296_j05.g1)
ACCAG424150AG424151
length737732
length of high quality
(start - end)
318 (44 - 361)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no296_j05.b1 PHD_FILE: MSMg01no296_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:48 2005CHROMAT_FILE: MSMg01no296_j05.g1 PHD_FILE: MSMg01no296_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGAGCTCAAATGATCTTCCTGCTTCAGCTGACTGAGTAGCTGGGGC
TGCATGTGCACCCACCGTGAGTGTTGATCATATCATTTATAGTATCCCAA
AGAGGAACAGAGTGGAGGCCTGAAGGAAGACTTGTAAAGAAGCGAAAGGA
GAGCTGCTGGTGGCTGAAATGGATGGATGCTGAGGATTAAGCTAACATGG
TTTAATGAATGACACAGGTGGTATGTGAGAGAAATTAAGGATGATTGTAA
GGTTTTTGGTCTGAGCAGTTATAAATCTGTTGTCCAATGAACTAGGGATG
ATGTCAAGATTCATGCTGGGCACCCCCCCCCGCCTTTTTAGGCACAGTAA
GTGGGAGATGACTGTTACCCCCCCGGAATAAATAAGTTTTGTTAGTCTGG
GTGTCAGGGGAAAGGTCTAAACTGGAGATAGTTTTGTAGTCATCTATTTA
GGTAATATACAAACCACCAGACTGGATGAGATTATTAAGACAGTCATTAT
AGACCAAAAATTCATCATGGTGTATAGTTTAGATAAAATCTTAGTAGGTA
GTCAAGGCTAGTGTGAACTCCCTGGTTGTTGTGCCTTTGCCTCCTAAGTG
CTGAGAATATATGTGTGCCACCCTTCCTGGCAAGGAATACTCTTTTGCAT
CGCCCCTGTTAAGCTTTATTTATGTAAGCCTCTTGTT
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGCCTAACTCAAGGCATGGTGTT
CTCCATGAGGCCTTGTCCTGTTCTCTGCAGGACACTCAAGGGCTGCAGTC
TCCTAGGCTTTCCCTCTGGCTCACTGGACTGAAGCAAACTGTTTTCACCT
CCGAGAAGCCCAGGAAGCCAATGTGCTCACTAGTGACTGACCTCAGAGGC
TAGCCCTGCAGTGCAGCTGTGGGTCAGCCTTTCTCCCCAAGGGGACCTGG
CCTCAGGGTCTGTGTGCATCTGTTGGATTGCACAGGCGATCCTGCTGGAG
CCCTTTCTGCAGGTAGNATCCGNNTTCTGNTTCGCCCATCCAGCTCTTCT
GGAGAGCTCAATCACTGCCCCCCAAAACACGAAAAAAAGCCCAGGGGGGC
GGGCTCGTGTTAACTGTCGCCAAGACCCAGCCTCAACTTCCTGGCTCTGT
GCTCTGAAGGCATTCACGTGGGAAGAGCCTGCTTTCTCTGGGTGCTGTGA
AGGCAGGAGCGATTCCTGCTAGCTGGGCTCTTCTCAAGCCAGACAAGCTG
CATGAGCGATCCTCGCTGCTTGAGAGGAAAGATGCGAGTGAAGCAGACCT
AACCAATGTCTACCATGCTTGGTCCTCAGCTCTGACAGAAGGATATGGTG
GCAGTGCTCCATCACACAGGACCTTCTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_j05.g1 MSMg01no296_j05.g1 CHROMAT_FILE:
MSMg01no296_j05.g1 PHD_FILE: MSMg01no296_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:48 2005
         (283 letters)



>mm_chr9_110596950_110597632
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcctaactcaaggcatggtgttctccatgaggccttgtcctgttctctgcaggacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 catgcctaactcaaggcatggtgttctccatgaggccttgtcctgttctctgcaggacac 424

                                                                       
Query: 61  tcaagggctgcagtctcctaggctttccctctggctcactggactgaagcaaactgtttt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcaagagctgcagtctcctaggctttccctctggctcactggactgaagcaaactgtttt 364

                                                                       
Query: 121 cacctccgagaagcccaggaagccaatgtgctcactagtgactgacctcagaggctagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 363 cacctccgagaagcccaggaagccaatgtgctcactagtgactgacctcagaggccagcc 304

                                                                       
Query: 181 ctgcagtgcagctgtgggtcagcctttctccccaaggggacctggcctcagggtctgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctgcagtgcagctgtgggtcagcctttctccccaaggggacctggcctcagggtctgtgt 244

                                                      
Query: 241 gcatctgttggattgcacaggcgatcctgctggagccctttct 283
           ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 243 gcatctgctggattgcacaggcgatcctgctggagccctttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)