Query= MSMg01no297_e01.b1 MSMg01no297_e01.b1 CHROMAT_FILE:
MSMg01no297_e01.b1 PHD_FILE: MSMg01no297_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:39 2005
(666 letters)
>mm_chr9_52772531_52773599
Length = 1069
Score = 1083 bits (560), Expect = 0.0
Identities = 640/668 (95%), Gaps = 7/668 (1%)
Strand = Plus / Plus
Query: 2 gaattccatggttgattcccaa-attggcttaaatgccctttcttacctataccttcaca 60
|||||||| |||||| | |||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 202 gaattccacggttgagt-ccaagattggcttaaatgccctttcttacctatacctttaca 260
Query: 61 agtcccagcaatagctggtcccactatcattgtctgttagcttatctgtctcctctatca 120
|||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||
Sbjct: 261 tgtcccagcaatagctggttctactatcattgtctgttggcttatctgtctcctctatca 320
Query: 121 tggctggcttatctgtctcctccacacacttatcagatccgtgatgatagagtctcatct 180
|| | |||||||||||||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct: 321 tgt-tagcttatctgtctcctccacacacttatcagatccttgaggatagagtttcatct 379
Query: 181 tcaattacttagtgcagaagtggcatatagaagttaataattacttattaaaaa-tgaat 239
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct: 380 tcaattacttagtgcagaagtcgcatatagaagttaataattatttattaaaaaatgaat 439
Query: 240 aaatcaatcaaagtagataaatgcttggaataaagaactacttgggtctacttacacgca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 aaatcaatcaaagtagataaatgcttggaataaagaactacttgggtctacttacacaca 499
Query: 300 agctagtaaacctggtgagagagaagtagaaaatcccagacctgaaatatgggtacatcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agctagtaaacctggtgagagagaagtagaaaatcccagacctgaaatatgggtacatcc 559
Query: 360 actacagttcacagtgctgcaggttgatgattgtggagccaaaaatcagaactgatgaat 419
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cctacagttcacagtgctgccggttgatgattgtggagccaaaaatcagaactgatgaat 619
Query: 420 gggcagtgtcagaggacaaaggaaagactcccaaagtcacacttgattccctttacaagg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gggcagtgtcagaggacaaaggaaagactcccaaagtcacacttgattccctttacaagg 679
Query: 480 aaaaaaagaagggacctatcttttatagagcatatacaaatatcccttttatactaagat 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaaaaagaagggacctaccttttatagagcatatacaaatatcccttttatactaagat 739
Query: 540 aagacaaggcacaggaagctaataacacatcatgcacatagcaacatggtataaaacttg 599
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 740 aaggcaaggcacaggaagctaataacacatcatgcacatagcaacgtggtataaaacttg 799
Query: 600 gccattctgatttcagagtccataccttttccccccttctcc---ccatcttttcccaga 656
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 800 gccattctgatttcagagtccataccttttccccccttctccttcccaccttttcccaga 859
Query: 657 tgctcctt 664
||||||||
Sbjct: 860 tgctcctt 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1069
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1059
Effective search space: 694704
Effective search space used: 694704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_e01.g1 MSMg01no297_e01.g1 CHROMAT_FILE:
MSMg01no297_e01.g1 PHD_FILE: MSMg01no297_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:39 2005
(404 letters)
>mm_chr9_52958090_52958890
Length = 801
Score = 714 bits (369), Expect = 0.0
Identities = 395/405 (97%), Gaps = 5/405 (1%)
Strand = Plus / Minus
Query: 1 attatcagaatatccattaaggctttttttttttttaaacttgaagaaagccatgcatga 60
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 601 attatcagaatatccattaaagc---ttttttttttaaacttgaagaaagccatgcatga 545
Query: 61 taacgcagggcacagatagaaaagtacccaccagacagcgct-tctcactttcatattga 119
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 544 taacgcagggcacagatagaaaagtacccaccagacagcg-tgtctcactttcatattga 486
Query: 120 cagtggatttagtgtaataatgacacatgatagaagtatctccatactacgtgggaggaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cagtggatttagtgtaataatgacacatgatagaagtatctccatactacgtgggaggaa 426
Query: 180 aactgcatttttacatggacttagtcatttacccaaattaaaaactgtaagttattacct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aactgcatttttacatggacttagtcatttacccaaattaaaaactgtaagttattacct 366
Query: 240 acagatttttggttgagaatagactttttagtgtttggagaagattggttgcttttgtaa 299
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 365 acagatttttggttgagaatagactttttagtgtttgtagaagattggctgcttttgtaa 306
Query: 300 gcttaaaatgacattctcttttactttagtgaatcattttgtcctgaactttaatactgt 359
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 305 gcttaaaatgacattctcttttactttagtgaatcattttgtcttgaactttaatactgt 246
Query: 360 atgttcccccacccccattttttaaaaacctattttgtgatcagt 404
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atgtccccccacccccattttttaaaaacctattttgtgatcagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 801
Length adjustment: 9
Effective length of query: 395
Effective length of database: 792
Effective search space: 312840
Effective search space used: 312840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
