Query= MSMg01no297_p03.b1 MSMg01no297_p03.b1 CHROMAT_FILE:
MSMg01no297_p03.b1 PHD_FILE: MSMg01no297_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:30 2005
(662 letters)
>mm_chr9_90637780_90638840
Length = 1061
Score = 880 bits (455), Expect = 0.0
Identities = 547/579 (94%), Gaps = 4/579 (0%)
Strand = Plus / Minus
Query: 5 gaattcatagcaaagttctgatggattatacccntttttactaaaaaagagacagacaag 64
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 600 gaattcatagcaaagttctgatggattataccc-tttttactaaaaaagagacagacaag 542
Query: 65 gaagaaagagaaagaccactttagaagcaaaaaattggggataaataaattaaggaattt 124
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 541 gaagaaagagaaagaccaatttagaagcaaaaaattggggataaataagttaaggaattt 482
Query: 125 tgataattatgttatttatttcagtattatacattagaaagcaaactactttattcctca 184
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgatgattatgttacttatttcagtattatacattagaaagcaaactactttattcctca 422
Query: 185 taattctttactgatgataaaattatttcccttttcatatcaaaatatatttctttatta 244
||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||
Sbjct: 421 taactctttactgatgataaaatcatttcctttttcatattaaaatatatttctttatta 362
Query: 245 tacaacaaacattttttgaaatgaacatgtagatacagaaaaaacagctccatgtcagcg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 361 tacaacaaacattttttgaaatgaacatgtagatacagaaaaaacagctccatatcagcg 302
Query: 305 aaaatagggtaggctctgccaaggtaacaaaaatcctttgcttggctttgaaacaaatgg 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 301 aaaatagggtaggctctgccaaggtaacaaaaatcctttgcttggctttgaaacaaatag 242
Query: 365 cttacttcatgagcgcagtatttccgctaaacgttgttgtgatagtctgcttggggtccc 424
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 241 cttacttcatgagtgcagtatttccgctaaacgttgttgtgctagtctgcttggggtgcc 182
Query: 425 atgacaaagtaccacaggctatcttaaattataccaatgtgtttttctggaagctaaggg 484
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct: 181 atgacaaagtaccacaggctatcttaaattatactaatgtgtttttctgaaagctaaagg 122
Query: 485 tccaagatcaacttgcactgggtgtttactgcttctgcttctgcttctgcttctgcttct 544
||||||||||||||| ||||||||||| |||||| ||||| ||||| ||||| |||||
Sbjct: 121 tccaagatcaacttgtactgggtgttt---gcttcttcttcttcttcttcttcttcttct 65
Query: 545 gcttctgcttctgcttctgcttctgcttcttctccttct 583
||||| ||||| ||||| ||||| |||||||| |||||
Sbjct: 64 tcttcttcttcttcttcttcttcttcttcttcttcttct 26
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1061
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1051
Effective search space: 685252
Effective search space used: 685252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_p03.g1 MSMg01no297_p03.g1 CHROMAT_FILE:
MSMg01no297_p03.g1 PHD_FILE: MSMg01no297_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:30 2005
(570 letters)
>mm_chr9_90496923_90497891
Length = 969
Score = 1056 bits (546), Expect = 0.0
Identities = 564/570 (98%), Gaps = 1/570 (0%)
Strand = Plus / Plus
Query: 1 tcactatctcaacttggaatgttactgtttttcctccctgtaagtctgttataggctttt 60
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactgtctgaacttggaatgttactgtttttcctccctgtaagtctgttataggctttt 260
Query: 61 agggggagcagagataagatatatagaatacatgtcactgccagacatgtagcctttact 120
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 -gggggagcagagataggatatatagaatacacgtcactgccagacatgtagcctttact 319
Query: 121 attcatttagaatgcaagtttcaaaggagtagggatttattgttttatttatgcaataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attcatttagaatgcaagtttcaaaggagtagggatttattgttttatttatgcaataat 379
Query: 181 ttattcctcatacctagaagaatgactacatataatagcaactcaaaaatattttcaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttattcctcatacctagaagaatgactacatataatagcaactcaaaaatattttcaaat 439
Query: 241 aaatgaattggcttatttaaagaataaatttatgttagctgtagctaggtaataaaatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaatgaattggcttatttaaagaataaatttatgttagctgtagctaggtaataaaatat 499
Query: 301 aagcattaatctatattaagcaatataggcagagacaaaagatttccccctaacatttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagcattaatctatattaagcaatataggcagagacaaaagatttccccctaacatttca 559
Query: 361 aacaatgtattccaatcacactcacttcttatttcccaggtccaccctcaaacccttgag 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aacaatgtactccaatcacactcacttcttatttcccaggtccaccctcaaacccttgag 619
Query: 421 tccctggccaaacccacaaaaccacaaagtccaatttgcactgcacttatacttattgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tccctggccaaacccacaaaaccacaaagtccaatttgcactgcacttatacttattgca 679
Query: 481 gcatggtcaaaatcccaagtagtgagttccttaaagaaaactgagtgctcccgaccctca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcatggtcaaaatcccaagtagtgagttccttaaagaaaactgagtgctcccgaccctca 739
Query: 541 ccagaagcaaaggaaaacattttaattcaa 570
||||||||||||||||||||||||||||||
Sbjct: 740 ccagaagcaaaggaaaacattttaattcaa 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 969
Length adjustment: 10
Effective length of query: 560
Effective length of database: 959
Effective search space: 537040
Effective search space used: 537040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
