BAC Information

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BAC

Clone NameMSMg01-298G04
Chromosome9 (Build37)
Map Location 123,967,718 - 123,967,960
singlet/doubletsinglet
Overlap genenone
Upstream geneTgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3
Downstream geneCcr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298G04.T7 (MSMg01no298_g04.b1)MSMg01-298G04.TJ (MSMg01no298_g04.g1)
ACCAG425450AG425451
length675730
length of high quality
(start - end)
192 (19 - 210)248 (53 - 300)
definitionCHROMAT_FILE: MSMg01no298_g04.b1 PHD_FILE: MSMg01no298_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:03 2005CHROMAT_FILE: MSMg01no298_g04.g1 PHD_FILE: MSMg01no298_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCATACAAAGAGGATCCGCGGAATTCATAATTTCCGTTGGTGAGATT
AAATGTTGATTCAGCCACTATGGAAACCAGTGAGAAGTAGTCTAGAGAGT
AGGATAATAGGAGATATATGCTGTAAGAGAGATTACAGGAATAATGGATA
ATAGAAGAATATAAACTTAGACTGAGGAGGGATAGGAAGTAAAATTCAGG
ATAGTGAATAAGGACTGATTAATAACATAAAGAACAAAGAGCCCTAGTGA
AAAATATTATTATACAGGAATTGTGAATAAACTAATTTTAAAAAGGTTTA
TTGGGTTAGAAAGGGACCTTTTATAATTCCCCCATTTTGGGAATATTTTT
TTTAGTGGGCGTAAAACCAAAATTCTCTCAATAATCTCCCATTAGGAGAT
AACATTAATCCCTCTGTGGTTCACCTTTCGTGTGAGGGTGGTGCCTTATA
ATAAAAAAATAATGACGTCTTTCTCTTTTTTGGGGTGGTTTATCTTTTCT
AACTTTTTTATCTGTGGGGGTCGGGGCGATCTCACTTTCAATCACCCCCC
CCCTTTCTTTTCTTTACCATCTTCTTCGCGTTTCCCCCCTTTTTTTCATT
TCTTTTCTTATATTTCGGCCCTCAAATTTATCTTAAACTTTCCTCCCTCC
TCTCTCCTTTTCTTCTCTCTGTTGG
GCCCGGTACCCGACCTCGGGGTNGAACTATANAAGGTTACGATAAACCGC
CGTATCAAGAATGGCCAAATCAGAGTCTTATTTCGCTGGTCCTGTAGCAC
CAAATTCTGTCTTGAATGTAGTCATGGCTATGAAGAGAGGTGATTTGGGT
TAGCTTGTAGGATCTCAGATATTTAGACTAAACAAAAGATGTAGAGAGTA
GGCAGCAGGACCTGAGCAGGATTGCAGCATGGCCAAAGGAATGGAAATAC
TCACTTAAGCATACATGGCAGTCAGATATTGTATTCCACTCTTTAACTTC
CATCCTTAGCTGAGGGGCTCATCTATTCCTGGTTCTGTGATGTTTTTTGC
TGCCTGCTCAGTTATCATTCTCCTTTGGAATGCATGTTATCCGAGAAGAG
CCCCTTTACTTTGAAGTTATACCTCTTTCTAGGGTGACATTTATCCTCTG
TAGGTCTTTCCTGGATCCAAATTGCCCCCAGAAACTTTGTCAAGATAAGA
TCCAATTTCTACCTACCTCCTTCCCCATTTTTGTAATTTAACTTTTCAGA
TATCTGTATAGTTTTAAGAAACTGTGTTTGATAGACTGTACTACATTTCT
GGGACTATAGGAAGGCAGTTCGAACGACCCACAAACAATCATTCTTCTTT
TTTAGACCTGGTAGCTCCTTGTCCTCGAACCCTATATATTCCAGGGGACC
TACTTTATGTCACAATACTGCTACACCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_g04.g1 MSMg01no298_g04.g1 CHROMAT_FILE:
MSMg01no298_g04.g1 PHD_FILE: MSMg01no298_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:04 2005
         (248 letters)



>mm_chr9_123967518_123968164
          Length = 647

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%), Gaps = 1/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatcaagaatggccaaatcagagtcttatttcgctggtcctgtagcaccaaattctgtct 60
           ||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||
Sbjct: 201 tatcaagaatggccaaatcagagtcttattt-gctggtcctgtagcaagaaattctgtct 259

                                                                       
Query: 61  tgaatgtagtcatggctatgaagagaggtgatttgggttagcttgtaggatctcagatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgaatgtagtcatggctatgaagagaggtgatttgggttagcttgtaggatctcagatat 319

                                                                       
Query: 121 ttagactaaacaaaagatgtagagagtaggcagcaggacctgagcaggattgcagcatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttagactaaacaaaagatgtagagagtaggcagcaggacctgagcaggattgcagcatgg 379

                                                                       
Query: 181 ccaaaggaatggaaatactcacttaagcatacatggcagtcagatattgtattccactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccaaaggaatggaaatactcacttaagcatacatggcagtcagatattgtattccactct 439

               
Query: 241 ttaa 244
           ||||
Sbjct: 440 ttaa 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 647
Length adjustment: 9
Effective length of query: 239
Effective length of database: 638
Effective search space:   152482
Effective search space used:   152482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)