BAC Information

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BAC

Clone NameMSMg01-298N08
Chromosome9 (Build37)
Map Location 94,855,166 - 94,855,431
singlet/doubletsinglet
Overlap geneSlc9a9
Upstream geneLOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298N08.T7 (MSMg01no298_n08.b1)MSMg01-298N08.TJ (MSMg01no298_n08.g1)
ACCAG425773AG425774
length829783
length of high quality
(start - end)
186 (128 - 313)266 (139 - 404)
definitionCHROMAT_FILE: MSMg01no298_n08.b1 PHD_FILE: MSMg01no298_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:35 2005CHROMAT_FILE: MSMg01no298_n08.g1 PHD_FILE: MSMg01no298_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTCCTTCCGNNCCNGTCNNNAATTTTCCTCCCNCCCCCCCCCCAAAC
ATANAATCATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACCCCCTCTCCTGCATATTCTCACATCTTCTTGTACA
TCCTTAGAAACCATTCTCACTTCTCATCATCTCCTTTGTACTCATTCTTC
CTCCTTAGGTTCCACTCCTGACCAATGTGGACAGCATCAACTGAGTTCTC
TTATCTTTTGACCTTTGATCTTAGAATGGTTTGGCCAATATCAAGCACAG
TTAGGACCCTGGAGCAGGACAGGGTGAGGCAGCAGTGGGGCTAAAGATCT
GGGGTTCATGGCACCACTGCTGCTGCCTTATCTCAACTAAGTAGATTAAA
AGATACAATAAAGATCAGGTATATATATTCATGATATGGAAATGAAAGGA
CAATACTAAAATATAAAAATCAATGACATGAAAGGTTGGATATTTGAAGA
GAGAACCAAGATTGTTACAATTTAACCAAAATAGTGAGGCGCAGGGAGAG
ATACTGAGATTGAGACACCGATAGAGATGGCCAACATTCCATCCTTTTCC
TTTCTTATTACCCCTTATAATTATATAATTCCCACCTAAAAAATTCTTAT
ATATCCCTTCCCTTTCATTCCTTTCTAATAAAATTTAATCCTTTCTTCAA
TATCTCTCAACATTATCCCCCCATACACCCAAATACTCCCACCATATATC
ATAAACCCCAAATCAATTACACTCCACATATTTTCCCTATTACCCCCCTC
TCATAACCCACCCCATCAAATTTATCATT
CCTTATCGCTTTTCGGTTCCCTTTTCCCCCTAATCCTCAACTTTCCTTTN
CCCGCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXATCCGCAGTGGAGG
NNGAACNANAGAAGGTTTCAAGAAAATCCGAGAAATCNCCTTTCTCATGC
AGATTCTTAAGCTATAAGAGAACTTCCAGAAGGGGTAAGGAGTCTTCTTG
GGTTTAAAGAGGACAATGACAGGTGTGATGGCATATTCCAGGACTGCTGA
GGACAGCAGCAGGAGGGGTGAGAAACAACAGTGCTCAGAAAAGAGGGGGC
GGGTTCCTCTGTCCTTGGCACAGACATAGCAGAAGTCCCCATTCTCCTTG
TCTCTTTTTTTTCATAAAGCAGTTTTTTTTTTTTGCTTTAATCCACAAGC
AATCAGCTTCTTTAAACAAGATTATTCACTCTCATTTTTGATTAAAATAC
AGTTATAACCTCCCCCCAGATCCTCACTCTCCAACCTCTCTCATACCCGC
TTCCCACTAAAATGCATACCTTTTTCTTTAACTATTAGATACATACCTAT
ACATATATATGGCAATATTATATACTATATATAGCGATATTATACAGTCA
TATAATTAAAATATATATATCAAAATATTATATTTTCATACCATATAAAT
TGATATATTACTTCTGAAAGATTGATGACATGTGTTTAGGAATGTATAAA
GCCTAAAATTCTAGTTTATCTACCTTCCACTTGAAGAATAAAATCCTTTC
TATATAGGAAAAGGATCTTTACCTCTGACCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_n08.g1 MSMg01no298_n08.g1 CHROMAT_FILE:
MSMg01no298_n08.g1 PHD_FILE: MSMg01no298_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:36 2005
         (266 letters)



>mm_chr9_94854966_94855631
          Length = 666

 Score =  491 bits (254), Expect = e-143
 Identities = 263/266 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttctcatgcagattcttaagctataagagaacttccagaaggggtaaggagtcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttctcatgcagattcttaagctataagagaacttccagaaggggtaaggagtcttct 260

                                                                       
Query: 61  tgggtttaaagaggacaatgacaggtgtgatggcatattccaggactgctgaggacagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggtttaaagaggacaatgacaggtgtgatggcatattccaggactgctgaggacagca 320

                                                                       
Query: 121 gcaggaggggtgagaaacaacagtgctcagaaaagagggggcgggttcctctgtccttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaggaggggtgagaaacaacagtgctcagaaaagagggggcgggttcctctgtccttgg 380

                                                                       
Query: 181 cacagacatagcagaagtccccattctccttgtctcttttttttcataaagcagtttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacagacatagcagaagtccccattctccttgtctcttttttttcataaagcagtttttt 440

                                     
Query: 241 ttttttgctttaatccacaagcaatc 266
           |||   ||||||||||||||||||||
Sbjct: 441 tttacagctttaatccacaagcaatc 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)