Query= MSMg01no299_h04.b1 MSMg01no299_h04.b1 CHROMAT_FILE:
MSMg01no299_h04.b1 PHD_FILE: MSMg01no299_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:23 2005
(375 letters)
>mm_chr9_77838346_77839121
Length = 776
Score = 667 bits (345), Expect = 0.0
Identities = 362/369 (98%), Gaps = 4/369 (1%)
Strand = Plus / Plus
Query: 5 gaattcacatgcatcgcctgcatgcaggagcccacagaggccagaagagggaatctgaac 64
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcacatgcatcgcatgcatacaggagcccacagaggccagaagagggaatctgaac 267
Query: 65 ctctggactggagttataaatggttataagcttccacgtgggtgctggaaatcaaaccca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctctggactggagttataaatggttataagcttccacgtgggtgctggaaatcaaaccca 327
Query: 125 ggacatgagaaagtgctcttaaagcactgagccctctcttcttaagtctcaaaatattct 184
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 328 ggacatgagaaagtgctcttaaagcactgagccctctctt---aagtctcaaaacattct 384
Query: 185 tgatgttcctaacgtctcctttgatctttggcaaacagggtt-atgaagataagtctgat 243
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 tgatgttcctaacgtctcctttgatctttggcaaacagggttgatgaagataagtctgat 444
Query: 244 ccattgatcacaatcgctccaatctgacagcaacactctggtcagatttcttcaatgcct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccattgatcacaatcgctccaatctgacagcaacactctggtcagatttcttcaatgcct 504
Query: 304 gagatgtctttgacagaaactctgatatgtcccactgtcctcttggacctacctaaccag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagatgtctttgacagaaactctgatatgtcccactgtcctcttggacctacctaaccag 564
Query: 364 tttatcctt 372
|||||||||
Sbjct: 565 tttatcctt 573
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 776
Length adjustment: 9
Effective length of query: 366
Effective length of database: 767
Effective search space: 280722
Effective search space used: 280722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_h04.g1 MSMg01no299_h04.g1 CHROMAT_FILE:
MSMg01no299_h04.g1 PHD_FILE: MSMg01no299_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:23 2005
(290 letters)
>mm_chr9_77998772_77999461
Length = 690
Score = 507 bits (262), Expect = e-148
Identities = 283/290 (97%)
Strand = Plus / Minus
Query: 1 tgtgtgggtgtgtgcacatgaggccagaggccctggagccctctggagctggagtgataa 60
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 643 tgtgtgggtgtgtgcacacgaggccagagaccctggagccctctggagctggagtgataa 584
Query: 61 atggttggttctaagccacctgagaagggtggggaactcaacttgggttctccctgagca 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 acggttggttctaagccacctgagaagggtggggaactcaacttgggttctccctgagca 524
Query: 121 caagacatactcttaaggctcagccatctccccgccacacaggaatcttctctatagcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 523 caagacatactcttaaggctcagccatctccccgccacacaggaatcttctctgtagcac 464
Query: 181 cttcagaagcacatggaggtaaaaaagagaggaagccggaaaggaggctatggggacacc 240
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 463 cttcagaagcacatggaggtaaaaaagagagggagccgggaaggaggctatggggacacc 404
Query: 241 atcctcagaaaacatgatgtatttgggggttggagaaatggctcagccat 290
||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 403 atcctcagaaaacatgatgtatttgggggttggagaagtggctcagccat 354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
