Query= MSMg01no300_n01.b1 MSMg01no300_n01.b1 CHROMAT_FILE:
MSMg01no300_n01.b1 PHD_FILE: MSMg01no300_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:03 2005
(175 letters)
>mm_chr9_34264584_34265159
Length = 576
Score = 288 bits (149), Expect = 1e-82
Identities = 167/173 (96%), Gaps = 1/173 (0%)
Strand = Plus / Plus
Query: 1 caaaggctcaagagtaaatgggaagaaatactccaggttgttcaacttgccttttagcaa 60
|||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 201 caaaggctcaagagtagatgggaagaaatactccaggttgttcaacttaccttctagcaa 260
Query: 61 gtaccggagaaaacttctaggtttgaagagacaggttgtggcttttgactttctgggtt- 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaccggagaaaacttctaggtttgaagagacaggttgtggcttttgactttctgggtaa 320
Query: 120 tattgctgtggtgggaatcatagatgagaaggagacaaggaatgtttcaaagg 172
|||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattgctgcggtgggaatcatagatgagaaggagacaaggaatgtttcaaagg 373
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 576
Length adjustment: 8
Effective length of query: 167
Effective length of database: 568
Effective search space: 94856
Effective search space used: 94856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no300_n01.g1 MSMg01no300_n01.g1 CHROMAT_FILE:
MSMg01no300_n01.g1 PHD_FILE: MSMg01no300_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:03 2005
(293 letters)
>mm_chr9_34280401_34281094
Length = 694
Score = 530 bits (274), Expect = e-155
Identities = 287/294 (97%), Gaps = 6/294 (2%)
Strand = Plus / Minus
Query: 1 cagacacaaggccccttgccttggctctagggataaagctagacttctccacggagatgg 60
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 507 cagacacaaggcc-----ccttggctctagggataaagctagacttctccagggagatgg 453
Query: 61 cgaatgtcagca-ttttttttttaacagacacacaggaggatgcacattttgatacatta 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgaatgtcagcatttttttttttaacagacacacaggaggatgcacattttgatacatta 393
Query: 120 tcagccatataagcaaagtagaaagggatgattgcaattacaagcacttaagcattcact 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tcagccatataagcaaagtagaaagggatgattgcaattacaagcacttaagcattcact 333
Query: 180 ttggcatgcagagttttgaactttgtcctggatatagcgacagacacaatgcgaaccttg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttggcatgcagagttttgaactttgtcctggatatagcgacagacacaatgcgaaccttg 273
Query: 240 ctttatttcctgaagctcattgttcagaatgagtcagggatggcgggcgattat 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ctttatttcctgaagctcattgttcagaatgagtcagggatggcgggcgattat 219
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 694
Length adjustment: 9
Effective length of query: 284
Effective length of database: 685
Effective search space: 194540
Effective search space used: 194540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
