BAC Information

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BAC

Clone NameMSMg01-302C05
Chromosome9 (Build37)
Map Location 42,229,798 - 42,230,124
singlet/doubletsinglet
Overlap geneTbcel
Upstream geneLOC100042464, EG667566, 6720432D03Rik, Sorl1, Sc5d, Tecta
Downstream geneGrik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302C05.T7 (MSMg01no302_c05.b1)MSMg01-302C05.TJ (MSMg01no302_c05.g1)
ACCAG428126AG428127
length725722
length of high quality
(start - end)
321 (42 - 362)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no302_c05.b1 PHD_FILE: MSMg01no302_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:42 2005CHROMAT_FILE: MSMg01no302_c05.g1 PHD_FILE: MSMg01no302_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACACAACTATCAGACAGCAGTTAATTTTTTTTTCATCTGCATACACTTA
CCATGACAATCAGAACTTTATTCAAAATGGCTTTGTAAGTTCATCTTGTA
CTGCCTACCTCTCCAAACTCAATGAAGCAATGAGTTAGACAAGGTTAAAG
TCAAAGGCATACAATGCAGGCTAGAAATATGTGTCTGTGTGTGTCTCTGT
GTGTGTGTGTGTGTGTGTGTGTAACAAATGAAATGGCATCTGACAGGAAA
AAAAAAAGCAAAAAACTGCCGTTGCCATTCACTGGTAAGTCTGACAAAAC
TTGGATTTTAGATTACCGCCGGNTCATGTCCTGTGATCCACATGCACAGG
AGGTGGNGGTGGGCTGGAGAAAAAAATAAAAAGACAGTACTGACAAACCA
AACGAAGAAAAAGCCATTAGTACTGTCAATTAGTACTAATGGCTTGACCT
AGCTGGTATCACAAATGGCATTCAATAACTAAGAATAAGTATCTCTTTTT
AGTGTATGCAAACAAGATTGACCATGTGCCTACCCAAGGCTATCTCAAGC
ATCACCTCAGCAACCCTCTTCCCCACATGCATGTGTGCACATGTGTGCGC
ACATGTATGCATGCACATGTACGCTTATGCGTAATCATAGAGCCAAGGGA
CAATCTCGAGTGACATGATCTCTAN
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCACACTGCGGTTTATGTCTGAATGAGA
CTGCCTAATGGGCATGTTTCCTCCACAAGGTACGGAGAGCCTCCCATGTC
TTAGGAACAAATACCATTTCAGTATTCGTCTTGAGAGACATCTTAAATAG
CTACATCAGATGCACAAAACCCATGAAAAGTCTAGCATTGAGTAGATCCT
CAAATGGGAGCTTGTTTACAGAGCTGGAGCCAGAAGTGGGAGCCCCACCC
TGTCTGCCTCAGCTCCAGGTATTCACTCGCTAACTCCTACTGTGGACCCT
CTGCGTGTANCCTANATTCCNNACCGANATCCTGAATGTTGACCTGCAGA
TACATTTGGCAAACCGATGGAAAAAAAAAAAAAAAGACGTGGGGGGGGGG
TTGGAAAGTATTGAAGATAATCTTTTAGGAGATTGTTAGCATTAGAGCTG
GCCTTGCCATACACATCGCAGAGCTGTTTATCAGGAGAGAATCGCTTAGT
TCAGTGACGTCCACATGCTAAGTTTCCTGATTGGCTTATGGCATTATTGC
AGTGATAAGGCTTTCTTTTCTTGAAGATGCTTTTATTATGTTGATAATCA
CGGCATTGTCATTTACCCCATAGGCTTGTACCAAATTAGGAAAAATTTCC
GTTTCTACTTTTCGAAAACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_c05.b1 MSMg01no302_c05.b1 CHROMAT_FILE:
MSMg01no302_c05.b1 PHD_FILE: MSMg01no302_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:42 2005
         (321 letters)



>mm_chr9_42229595_42230315
          Length = 721

 Score =  569 bits (294), Expect = e-166
 Identities = 313/328 (95%), Gaps = 15/328 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacacaactatcagacagcagttaatttttttttcatctgcatacacttaccat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacacaactatcagacagcagttaatttttttttcatctgcatacacttaccat 263

                                                                       
Query: 64  gacaatcagaactttattcaaaatggctttgtaagttcatcttgtactgcctacctctcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacaatcagaactttattcaaaatggctttgtaagttcatcttgtactgcctacctctcc 323

                                                                       
Query: 124 aaactcaatgaagcaatgagttagacaaggttaaagtcaaaggcatacaatgcaggctag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaactcaatgaagcaatgagttagacaaggttaaagtcaaaggcatacaatgcaggctag 383

                                                                       
Query: 184 aaatatgtgtctgtgtgtgtctct--------------gtgtgtgtgtgtgtgtgtgtgt 229
           ||||||||||||||||||||||||              ||||||||||||||||||||||
Sbjct: 384 aaatatgtgtctgtgtgtgtctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 443

                                                                       
Query: 230 gtaacaaatgaaatggcatctgacaggaaaaaaaaaagcaaaaaactgccgttgccattc 289
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 gtaacaaatgaaatggcatctgacaggaaaaaaaaa-gcaaaaaactgccgttgccattc 502

                                       
Query: 290 actggtaagtctgacaaaacttggattt 317
           ||||||||||||||||||||||||||||
Sbjct: 503 actggtaagtctgacaaaacttggattt 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)