Query= MSMg01no302_d14.b1 MSMg01no302_d14.b1 CHROMAT_FILE:
MSMg01no302_d14.b1 PHD_FILE: MSMg01no302_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:49 2005
(548 letters)
>mm_chr9_66441532_66442479
Length = 948
Score = 1006 bits (520), Expect = 0.0
Identities = 538/548 (98%), Gaps = 7/548 (1%)
Strand = Plus / Minus
Query: 1 tactgttttgccagtggagaggcgaggaaaaagagtcgagaggactagctaaggtttgcc 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tactgttttgccagtggataggcgaggaaaaagagtcgagaggactagctaaggtttgcc 809
Query: 61 atgaagtacctgccagagctgatctgaacaactttccacaatttctcaccatcaaaacct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 atgaagtacctgccagagctgatctgaacaactttccacaatttctcaccatcaaaacc- 750
Query: 121 ttgttttgtccaagccttgttttgacagcaatcatatacaacttggggaagtggtagagt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ------cgtccaagccttgttttgacagcaatcatatacaacttggggaagtggtagagt 696
Query: 181 tgcttggactgaggaatctgaaataccaccctgggcagagatgtcctaggtgggtggaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tgcttggactgaggaatctgaaataccaccctgggcagagatgtcctaggtgggtggaca 636
Query: 241 ctatcaggcagaaggctacagggtgcagtagtggggtgtacggaagtggcttaaggggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ctatcaggcagaaggctacagggtgcagtagtggggtgtacggaagtggcttaaggggtg 576
Query: 301 ctagaggcgtgcacttcagggaggtgcccagtgctaactaaccactatccggcccagccg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ctagaggcgtgcacttcagggaggtgcccagtgctaactaaccactatccggcccagcca 516
Query: 361 gttaatcatttcctgacctttcctttcctgccccatggattggcacattgttcttccctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gttaatcatttcctgacctttcctttcctgccccatggattggcacattgttcttccctc 456
Query: 421 tccacttgcttgtcaggggatgaaggaaagaagcccctttaccaggttaaacaccaccaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tccacttgcttgtcaggggatgaaggaaagaagcccctttaccaggttaaacaccaccaa 396
Query: 481 ccaaacaaagaaagaaagcccaactttggaggctagatttgtgggagccccagatatcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccaaacaaagaaagaaagcccaactttggaggctagatttgtgggagccccagatatcct 336
Query: 541 caaggcag 548
||||||||
Sbjct: 335 caaggcag 328
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_d14.g1 MSMg01no302_d14.g1 CHROMAT_FILE:
MSMg01no302_d14.g1 PHD_FILE: MSMg01no302_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:49 2005
(284 letters)
>mm_chr9_66274026_66274709
Length = 684
Score = 520 bits (269), Expect = e-152
Identities = 278/281 (98%)
Strand = Plus / Plus
Query: 1 tatgtgcatactaggcaagctttctactgcggaactgtatctctacccctggagctctta 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tatgtgcatactaggcaagctttctactgcggaactgtatctctagtcctggagctctta 260
Query: 61 ttagaaagagttcttggggctttggaaatagctcagtggataaagtacttgtgaaaacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagaaagagttcttggggctttggaaatagctcagtggataaagtacttgtgaaaacct 320
Query: 121 gtggtcaggtcctgagaacacacataagtatttgtgtgtttataatccctttatggcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggtcaggtcctgagaacacacataagtatttgtgtgtttataatccctttatggcaag 380
Query: 181 aaggaagggaagatgggaatagctcgaagcttatgggccagctggtctggtatacacagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggaagggaagatgggaatagctcgaagcttatgggccagctggtctggtatacacagc 440
Query: 241 agcataaaccaaggtaccctatctcaaacaaagttgaaggc 281
|||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaaaaaccaaggtaccctatctcaaacaaagttgaaggc 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
