BAC Information

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BAC

Clone NameMSMg01-303M04
Chromosome9 (Build37)
Map Location 62,766,332 - 62,766,568
singlet/doubletsinglet
Overlap genePias1
Upstream geneKif23, Paqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4
Downstream geneLOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303M04.T7 (MSMg01no303_m04.b1)MSMg01-303M04.TJ (MSMg01no303_m04.g1)
ACCAG429259
length733744
length of high quality
(start - end)
---237 (124 - 360)
definitionCHROMAT_FILE: MSMg01no303_m04.b1 PHD_FILE: MSMg01no303_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:45 2005CHROMAT_FILE: MSMg01no303_m04.g1 PHD_FILE: MSMg01no303_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCGAGCGCCGCGGAACGAAC
TTCTATTTCATGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGATGCACTAACTATCTAAAGATACACAAG
GAGCATTCTTCCTATTCTACCAGCTACTATTCCCAACCGTGGGAAGCATG
CAAAGACTGAGCATTATGGGAAGGGGAGAAGACTACAAAGCAAAAAGCTG
GTTAGTATTTGGTACTATAAAAATTTAATTCTACATATAAGTAATCACAT
TTATAAAAAGCATACAAACTGGAGACAAATATTTGTAAGATTTAACAAAG
AGTGAATTCTCAATAGATTAAGCCTAGTAAGAAAACTAAGAAAAGAACAA
AAGAAAAAGGATCTTTGGTACCCACTCCCCCATGCAAATAGTTATAAACA
CCAAATATGCCTACTCTTCTCAAAAACAAAAGGAGTACTACATGCTAACA
TTTACTTAATGCTGAAGAATTTTTAAAAGATAACAGTGTTTGCATGCAAA
TAAACACTATAAATCAGAGAACACATTTGTACATCTTTGGGGAAAGCCAT
CTGTCTATGCTCACAAAATTTCTCAAAATCCTTCTTGCTCTTTGGCTCAA
AAACTCTACTTCTGAGAATTTACTGTAAGGAAATCATCATTCATCTATGC
CATGCTACTGCTGGTCTGACTGTATTCAAAACTATACTCCACATCCGAGT
ACAGGCTACATAGTGGTATATTCCTATCCCCACATGATATAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_m04.g1 MSMg01no303_m04.g1 CHROMAT_FILE:
MSMg01no303_m04.g1 PHD_FILE: MSMg01no303_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:45 2005
         (237 letters)



>mm_chr9_62766132_62766768
          Length = 637

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctactattcccaaccgtgggaagcatgcaaagactgagcattatgggaaggggagaagac 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctactatttccaaccgtgggaagcatgcaaagactgagcattatgggaaggggagaagac 260

                                                                       
Query: 61  tacaaagcaaaaagctggttagtatttggtactataaaaatttaattctacatataagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacaaagcaaaaagctggttagtatttggtactataaaaatttaattctacatataagta 320

                                                                       
Query: 121 atcacatttataaaaagcatacaaactggagacaaatatttgtaagatttaacaaagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcacatttataaaaagcatacaaactggagacaaatatttgtaagatttaacaaagagt 380

                                                                    
Query: 181 gaattctcaatagattaagcctagtaagaaaactaagaaaagaacaaaagaaaaagg 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattctcaatagattaagcctagtaagaaaactaagaaaagaacaaaagaaaaagg 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)