Query= MSMg01no304_a05.b1 MSMg01no304_a05.b1 CHROMAT_FILE:
MSMg01no304_a05.b1 PHD_FILE: MSMg01no304_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:05 2005
(703 letters)
>mm_chr9_10693464_10694562
Length = 1099
Score = 1272 bits (658), Expect = 0.0
Identities = 689/702 (98%), Gaps = 6/702 (0%)
Strand = Plus / Minus
Query: 1 ggagaggcttcttatatcttacgggaatcttccaggatagtaagagcttgatagtcatct 60
||||||||||||||||||| | |||||| | ||||||||||||||||||||||||||
Sbjct: 779 ggagaggcttcttatatct----gtaatcttacgggatagtaagagcttgatagtcatct 724
Query: 61 gtgtggctgaaacagctatctcctggctcagggaagagaacctgtcaagttgttaattgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gtgtggctgaaacagctatctcctggctcagggaagagaacctgtcaagttgttaattgt 664
Query: 121 tgaatttgaattttatgtattgaagctaatgtataaatgctttttaaaaatttgatgtgt 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 663 tgaatttgaattttatgtattgaagctaatgtatgaatgctttttaaaaatttgatgtgt 604
Query: 181 aatgtgctttgtgatacaaactttcaactacatggagattatgacgatatccctgtataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aatgtgctttgtgatacaaactttcaactacatggagattatgacgatatccctgtataa 544
Query: 241 tggagagcaaatgtgagttcagtagcaagttagtggtgtgctatttctatcttgatgaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tggagagcaaatgtgagttcagtagcaagttagtggtgtgctatttctatcttgatgaac 484
Query: 301 aatcctttgctagccaagataataggaaaaagccacctcatcagaagcacatgggagagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aatcctttgctagccaagataataggaaaaagccacctcatcagaagcacatgggagagt 424
Query: 361 gggtagccttaatatagaaaactaaaagccacatggtatttccagggcatcggcagttag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gggtagccttaatatagaaaactaaaagccacatggtatttccagggcatcggcagttag 364
Query: 421 ctcagtgccgagatgggaagagcaaggatagattttcaagtgttgtattaaatgatctta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctcagtgccgagatgggaagagcaaggatagattttcaagtgttgtattaaatgatctta 304
Query: 481 gcttcactctgtgattcatgagaggaaaagtagatggaaaataaactctagagcagtgtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcttcactctgtgattcatgagaggaaaagtagatggaaaataaactctagagcagtgtt 244
Query: 541 tctcaacttatgggttgcaaatcctttgccaagtcccttcctccaaaaatatttacatta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tctcaacttatgggttgcaaatcctttgccaagtcccttcctccaaaaatatttacatta 184
Query: 601 tgatttataacaatatcatattacagttataaaatatcaacaaaaatttttggttgggg- 659
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 183 tgatttataacaatatcatattacagttatgaaatatcaacaaaaatttttcgttggggg 124
Query: 660 -ttcccatactttgaggaactggattaaggggtcaaagtact 700
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gtccccatactttgaggaactggattaaggggtcaaagtact 82
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1099
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1089
Effective search space: 754677
Effective search space used: 754677
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_a05.g1 MSMg01no304_a05.g1 CHROMAT_FILE:
MSMg01no304_a05.g1 PHD_FILE: MSMg01no304_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:05 2005
(778 letters)
>mm_chr9_10618135_10619308
Length = 1174
Score = 1346 bits (696), Expect = 0.0
Identities = 751/777 (96%), Gaps = 14/777 (1%)
Strand = Plus / Plus
Query: 2 tcttattcatacttttgcagccaagtttcctgaagatcgaaccattgcaacccaattgtc 61
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 202 tcttattcatacttttgcagccaagtttcctgaagatcgaaacattgcaacccaattgtc 261
Query: 62 cgttcttattattaaaactatgtcctttacgttggttttagcctattttatgcacttctt 121
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 262 cgttcttattattaaaactttgtcctt----ttggttttagcctattttatgcacttctt 317
Query: 122 ttcaatttgtttttctcacaggaaaggttttttttgttttgttttgttttttttttcttg 181
|||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 318 ttcaatttgtttttctcacaggaaaggttttt---------tttt-ttttttttttcttg 367
Query: 182 gagccactgactagaacttttactaacaccacagcaggaagcttaaatgtgccagtttag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gagccactgactagaacttttactaacaccacagcaggaagcttaaatgtgccagtttag 427
Query: 242 ttcatagaaataaaaaataacaattgaatttggacagtaaaatcatttctttaaaatact 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttcatagaaataaaaaataacaattgaatttggacagtaaaatcatttctttaaaatact 487
Query: 302 tctaactgctttttatatgataagaaaattacttaacttttactctcatgaaatataatt 361
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 488 tctaactgctttttatatgataagaaaatgacttaacttttactctcatgaaatataatt 547
Query: 362 tttaaaatgattaccctaatttggttttgattattggtaaaagcacaagtgtttagcaac 421
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttaaaaatgattaccctaatttggttttgattattggtaaaagcacaagtgtttagcaac 607
Query: 422 ttatcatctatagccctgatttgagccacccacccactagtcctttgccagtaagctgtc 481
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 608 ttatcatctatagccctgatttgagccgcccacccactagtcctttgccagtaagctgtc 667
Query: 482 ttggaatataattataaaagtggtttaaggaaatctaccagtcaaactacagtctgcagg 541
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 668 ttggaatataattataaaagtggtttaaggaaatctaccagtcaaactacattctgcagg 727
Query: 542 tagtattttctataacatttcaaattatttttagcaagtaacaattcttctctcaaatgt 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cagtattttctataacatttcaaattatttttagcaagtaacaattcttctctcaaatgt 787
Query: 602 aagactatctttgcaatccattttctgatactaatgaacattttaaagcattaccatggc 661
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 788 aagactatctttgcaatccattttctgatactaatcaacattttaaaacattaccatggc 847
Query: 662 aaacagtagaaaccatcactctttatgtctaggtattttcgatgcttattttataaaaca 721
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 848 aaacagtagaaaccatcactctttatgtctaggtattttagatgcttattttataaaaca 907
Query: 722 gagcanaacactcttccatcaaacttgaaatcacactccggttttgctactctaaca 778
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 908 gagcaaaacactcttccatcaaacttgaaatcacactccggttttgccactctaaca 964
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 778
Length of database: 1174
Length adjustment: 10
Effective length of query: 768
Effective length of database: 1164
Effective search space: 893952
Effective search space used: 893952
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
