BAC Information

Click to search

BAC

Clone NameMSMg01-304A05
Chromosome9 (Build37)
Map Location 10,618,336 - 10,694,242
singlet/doubletdoublet
Overlap genenone
Upstream geneCntn5, LOC665154, LOC100039970
Downstream geneLOC665178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304A05.T7 (MSMg01no304_a05.b1)MSMg01-304A05.TJ (MSMg01no304_a05.g1)
ACCAG429432AG429433
length1,2811,325
length of high quality
(start - end)
703 (87 - 789)778 (80 - 857)
definitionCHROMAT_FILE: MSMg01no304_a05.b1 PHD_FILE: MSMg01no304_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:05 2005CHROMAT_FILE: MSMg01no304_a05.g1 PHD_FILE: MSMg01no304_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,693,545 - 10,694,242)(10,618,336 - 10,619,098)
sequence
NCCCTTTTTTNNNNNTCATTGGGCGCTAAGACTCCTATGGGAGAGGATCC
GCGGAATTCAGATCCACAGCATACACCTNATAACTGGGAGAGGCTTCTTA
TATCTTACGGGAATCTTCCAGGATAGTAAGAGCTTGATAGTCATCTGTGT
GGCTGAAACAGCTATCTCCTGGCTCAGGGAAGAGAACCTGTCAAGTTGTT
AATTGTTGAATTTGAATTTTATGTATTGAAGCTAATGTATAAATGCTTTT
TAAAAATTTGATGTGTAATGTGCTTTGTGATACAAACTTTCAACTACATG
GAGATTATGACGATATCCCTGTATAATGGAGAGCAAATGTGAGTTCAGTA
GCAAGTTAGTGGTGTGCTATTTCTATCTTGATGAACAATCCTTTGCTAGC
CAAGATAATAGGAAAAAGCCACCTCATCAGAAGCACATGGGAGAGTGGGT
AGCCTTAATATAGAAAACTAAAAGCCACATGGTATTTCCAGGGCATCGGC
AGTTAGCTCAGTGCCGAGATGGGAAGAGCAAGGATAGATTTTCAAGTGTT
GTATTAAATGATCTTAGCTTCACTCTGTGATTCATGAGAGGAAAAGTAGA
TGGAAAATAAACTCTAGAGCAGTGTTTCTCAACTTATGGGTTGCAAATCC
TTTGCCAAGTCCCTTCCTCCAAAAATATTTACATTATGATTTATAACAAT
ATCATATTACAGTTATAAAATATCAACAAAAATTTTTGGTTGGGGTTCCC
ATACTTTGAGGAACTGGATTAAGGGGTCAAAGTACTAGGAAGATTGAGAA
GCACTGTCTTCAATTATCATAGAGGAGTAATGACCAGCCATTAAAAACTG
TTTTCCCCAAGTATCCTTGAGGATGTAATTATTGTAAGGGTGGAGGATAT
TTTTTTCTCTGAATCACAAAAAAAAAATCCCTCCTTTCAGTGTGGCCCCT
TTTTTTAAAAGGAAGGCGGGCCGGAAAATTGGATTTTTAAACTATAATAA
GCCTGCGGGCGGTGGGTTCAAAAAGAACCAAAACTTGTTTTTTCCTTTTT
TTTATAGCAAGGAACAAGAATTATTTAAACCCTTCTTTTTTTTTATTCAC
AACCCCCCTCCTTATTTTTATTTTCTTTGAAATTTGTCTTATAAAAAAAA
TGTTTTCACCCACCAAAACCCTTTAATAGATTCCTCTTTTTTTTTAGTCA
TACCCCCCTGTGCTCTTATATCATGAAATAAAAAGAAAAACTTCTGCGGT
TATTTTAATTCGTGATCTGCTTTGCAGTTTG
NNCCTTTTTTTTTNNNACACATGGATGCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTATTCATACTTTTGCAG
CCAAGTTTCCTGAAGATCGAACCATTGCAACCCAATTGTCCGTTCTTATT
ATTAAAACTATGTCCTTTACGTTGGTTTTAGCCTATTTTATGCACTTCTT
TTCAATTTGTTTTTCTCACAGGAAAGGTTTTTTTTGTTTTGTTTTGTTTT
TTTTTTCTTGGAGCCACTGACTAGAACTTTTACTAACACCACAGCAGGAA
GCTTAAATGTGCCAGTTTAGTTCATAGAAATAAAAAATAACAATTGAATT
TGGACAGTAAAATCATTTCTTTAAAATACTTCTAACTGCTTTTTATATGA
TAAGAAAATTACTTAACTTTTACTCTCATGAAATATAATTTTTAAAATGA
TTACCCTAATTTGGTTTTGATTATTGGTAAAAGCACAAGTGTTTAGCAAC
TTATCATCTATAGCCCTGATTTGAGCCACCCACCCACTAGTCCTTTGCCA
GTAAGCTGTCTTGGAATATAATTATAAAAGTGGTTTAAGGAAATCTACCA
GTCAAACTACAGTCTGCAGGTAGTATTTTCTATAACATTTCAAATTATTT
TTAGCAAGTAACAATTCTTCTCTCAAATGTAAGACTATCTTTGCAATCCA
TTTTCTGATACTAATGAACATTTTAAAGCATTACCATGGCAAACAGTAGA
AACCATCACTCTTTATGTCTAGGTATTTTCGATGCTTATTTTATAAAACA
GAGCANAACACTCTTCCATCAAACTTGAAATCACACTCCGGTTTTGCTAC
TCTAACAAGTAAGTCTTAATTTGGACAACTGTAATGATTTTCAAATAGGG
NTTCTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTAANAAAC
CTTATGTAAAATTATAACCTCTCGGGAGTATTTTTTTTTCTTTAATCCCA
ACTAACATCATAACACCTTCTTTTCATTTTCTTTCCACACACATTTATTA
ATTATTAACTCTTCTAATCTCTTTCTTGTCTAGCTTCATAACTTCTACTT
TAATCCCTGTCTTCTATCCATCCTCTTTTATACCATATATAAATTCAACT
TTTCCTTTTTCTATATCGCTATCTTCTATTTTATATACTTCTTTACATTG
CTAATTCCAATTATTCGTATAATTATGCTATTTATTTATGATATTGAATA
TAATATACTAAATACATTCTATCATATTCTTCTATANACTGATTTAATTT
TAATTACAACAACATAATGCATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_a05.b1 MSMg01no304_a05.b1 CHROMAT_FILE:
MSMg01no304_a05.b1 PHD_FILE: MSMg01no304_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:05 2005
         (703 letters)



>mm_chr9_10693464_10694562
          Length = 1099

 Score = 1272 bits (658), Expect = 0.0
 Identities = 689/702 (98%), Gaps = 6/702 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagaggcttcttatatcttacgggaatcttccaggatagtaagagcttgatagtcatct 60
           |||||||||||||||||||    | |||||| | ||||||||||||||||||||||||||
Sbjct: 779 ggagaggcttcttatatct----gtaatcttacgggatagtaagagcttgatagtcatct 724

                                                                       
Query: 61  gtgtggctgaaacagctatctcctggctcagggaagagaacctgtcaagttgttaattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gtgtggctgaaacagctatctcctggctcagggaagagaacctgtcaagttgttaattgt 664

                                                                       
Query: 121 tgaatttgaattttatgtattgaagctaatgtataaatgctttttaaaaatttgatgtgt 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 663 tgaatttgaattttatgtattgaagctaatgtatgaatgctttttaaaaatttgatgtgt 604

                                                                       
Query: 181 aatgtgctttgtgatacaaactttcaactacatggagattatgacgatatccctgtataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aatgtgctttgtgatacaaactttcaactacatggagattatgacgatatccctgtataa 544

                                                                       
Query: 241 tggagagcaaatgtgagttcagtagcaagttagtggtgtgctatttctatcttgatgaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tggagagcaaatgtgagttcagtagcaagttagtggtgtgctatttctatcttgatgaac 484

                                                                       
Query: 301 aatcctttgctagccaagataataggaaaaagccacctcatcagaagcacatgggagagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aatcctttgctagccaagataataggaaaaagccacctcatcagaagcacatgggagagt 424

                                                                       
Query: 361 gggtagccttaatatagaaaactaaaagccacatggtatttccagggcatcggcagttag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gggtagccttaatatagaaaactaaaagccacatggtatttccagggcatcggcagttag 364

                                                                       
Query: 421 ctcagtgccgagatgggaagagcaaggatagattttcaagtgttgtattaaatgatctta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctcagtgccgagatgggaagagcaaggatagattttcaagtgttgtattaaatgatctta 304

                                                                       
Query: 481 gcttcactctgtgattcatgagaggaaaagtagatggaaaataaactctagagcagtgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcttcactctgtgattcatgagaggaaaagtagatggaaaataaactctagagcagtgtt 244

                                                                       
Query: 541 tctcaacttatgggttgcaaatcctttgccaagtcccttcctccaaaaatatttacatta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tctcaacttatgggttgcaaatcctttgccaagtcccttcctccaaaaatatttacatta 184

                                                                       
Query: 601 tgatttataacaatatcatattacagttataaaatatcaacaaaaatttttggttgggg- 659
           |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| 
Sbjct: 183 tgatttataacaatatcatattacagttatgaaatatcaacaaaaatttttcgttggggg 124

                                                     
Query: 660 -ttcccatactttgaggaactggattaaggggtcaaagtact 700
            | |||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gtccccatactttgaggaactggattaaggggtcaaagtact 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1099
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1089
Effective search space:   754677
Effective search space used:   754677
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no304_a05.g1 MSMg01no304_a05.g1 CHROMAT_FILE:
MSMg01no304_a05.g1 PHD_FILE: MSMg01no304_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:05 2005
         (778 letters)



>mm_chr9_10618135_10619308
          Length = 1174

 Score = 1346 bits (696), Expect = 0.0
 Identities = 751/777 (96%), Gaps = 14/777 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   tcttattcatacttttgcagccaagtttcctgaagatcgaaccattgcaacccaattgtc 61
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 202 tcttattcatacttttgcagccaagtttcctgaagatcgaaacattgcaacccaattgtc 261

                                                                       
Query: 62  cgttcttattattaaaactatgtcctttacgttggttttagcctattttatgcacttctt 121
           ||||||||||||||||||| |||||||    |||||||||||||||||||||||||||||
Sbjct: 262 cgttcttattattaaaactttgtcctt----ttggttttagcctattttatgcacttctt 317

                                                                       
Query: 122 ttcaatttgtttttctcacaggaaaggttttttttgttttgttttgttttttttttcttg 181
           ||||||||||||||||||||||||||||||||         |||| ||||||||||||||
Sbjct: 318 ttcaatttgtttttctcacaggaaaggttttt---------tttt-ttttttttttcttg 367

                                                                       
Query: 182 gagccactgactagaacttttactaacaccacagcaggaagcttaaatgtgccagtttag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gagccactgactagaacttttactaacaccacagcaggaagcttaaatgtgccagtttag 427

                                                                       
Query: 242 ttcatagaaataaaaaataacaattgaatttggacagtaaaatcatttctttaaaatact 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttcatagaaataaaaaataacaattgaatttggacagtaaaatcatttctttaaaatact 487

                                                                       
Query: 302 tctaactgctttttatatgataagaaaattacttaacttttactctcatgaaatataatt 361
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 488 tctaactgctttttatatgataagaaaatgacttaacttttactctcatgaaatataatt 547

                                                                       
Query: 362 tttaaaatgattaccctaatttggttttgattattggtaaaagcacaagtgtttagcaac 421
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttaaaaatgattaccctaatttggttttgattattggtaaaagcacaagtgtttagcaac 607

                                                                       
Query: 422 ttatcatctatagccctgatttgagccacccacccactagtcctttgccagtaagctgtc 481
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 608 ttatcatctatagccctgatttgagccgcccacccactagtcctttgccagtaagctgtc 667

                                                                       
Query: 482 ttggaatataattataaaagtggtttaaggaaatctaccagtcaaactacagtctgcagg 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 668 ttggaatataattataaaagtggtttaaggaaatctaccagtcaaactacattctgcagg 727

                                                                       
Query: 542 tagtattttctataacatttcaaattatttttagcaagtaacaattcttctctcaaatgt 601
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cagtattttctataacatttcaaattatttttagcaagtaacaattcttctctcaaatgt 787

                                                                       
Query: 602 aagactatctttgcaatccattttctgatactaatgaacattttaaagcattaccatggc 661
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 788 aagactatctttgcaatccattttctgatactaatcaacattttaaaacattaccatggc 847

                                                                       
Query: 662 aaacagtagaaaccatcactctttatgtctaggtattttcgatgcttattttataaaaca 721
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 848 aaacagtagaaaccatcactctttatgtctaggtattttagatgcttattttataaaaca 907

                                                                    
Query: 722 gagcanaacactcttccatcaaacttgaaatcacactccggttttgctactctaaca 778
           ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 908 gagcaaaacactcttccatcaaacttgaaatcacactccggttttgccactctaaca 964


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 778
Length of database: 1174
Length adjustment: 10
Effective length of query: 768
Effective length of database: 1164
Effective search space:   893952
Effective search space used:   893952
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)