Query= MSMg01no304_l07.b1 MSMg01no304_l07.b1 CHROMAT_FILE:
MSMg01no304_l07.b1 PHD_FILE: MSMg01no304_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:42 2005
(763 letters)
>mm_chr9_110264073_110265232
Length = 1160
Score = 1444 bits (747), Expect = 0.0
Identities = 758/763 (99%), Gaps = 3/763 (0%)
Strand = Plus / Minus
Query: 1 agcttcagcagcgggtagctggggagaaggaacaggagagaaagaataaggacatctgag 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 843 agcttcagcagcgggtagctggggagaaggaaaaggagagaaagaataaggacatctgag 784
Query: 61 aggcagagtctatgagatggtggtgacacgggagccactgcaattccaagtgcatcccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 aggcagagtctatgagatggtggtgacacgggagccactgcaattccaagtgcatcccca 724
Query: 121 ctgccagaactgtgtaaaacccccatcttatttaccacagaatttcagcactgaaattca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ctgccagaactgtgtaaaacccccatcttatttaccacagaatttcagcactgaaattca 664
Query: 181 gacattatcgagatcagaattttcaaacagattttagccacaaaacctacaaagaagccc 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gacatcatcgagatcagaattttcaaacagattttagccacaaaacctacaaagaagccc 604
Query: 241 aactagtataacaggctggctgactgttttctaaggctttagacaagacgctaaacacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aactagtataacaggctggctgactgttttctaaggctttagacaagacgctaaacacaa 544
Query: 301 agtcttatcaatcagacataggattaaaaaaaaaaaaaaactaggggagaggatacaaat 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 543 agtcttatcaatcagacataggatt---aaaaaaaaaaaactaggggagaggatacaaat 487
Query: 361 tctggttccgacagctgaggaactgctctatttaaagggacaaatcataagaattgtgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tctggttccgacagctgaggaactgctctatttaaagggacaaatcataagaattgtgaa 427
Query: 421 agacaccctgaggctggggatcactcagccatgctgagcacaggttaatgggtccatcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agacaccctgaggctggggatcactcagccatgctgagcacaggttaatgggtccatcac 367
Query: 481 acgtaaagaaactggcctcatgtcagcaagctatgaaatacatgtgtattttattttgtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acgtaaagaaactggcctcatgtcagcaagctatgaaatacatgtgtattttattttgtt 307
Query: 541 tcatgtttcacttaattttttttaatattcagaaataaactgtgtaagagggaggcaaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tcatgtttcacttaattttttttaatattcagaaataaactgtgtaagagggaggcaaac 247
Query: 601 tcgaggccttgtgaggtggtaccctcaaaacaagacgacagacacagaggaagtgactta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tcgaggccttgtgaggtggtaccctcaaaacaagacgacagacacagaggaagtgactta 187
Query: 661 catacagcatgacacacacacatcggatgtacagctttcatccacgcataaccctatagc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 catacagcatgacacacacacatcggatgtacagctttcatccacgcataaccctatagc 127
Query: 721 taatcaccaccgagatcaagctacagaacgtgtccagaagctc 763
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 taatcaccaccgagatcaagctacagaacgtgtccagaagctc 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 763
Length of database: 1160
Length adjustment: 10
Effective length of query: 753
Effective length of database: 1150
Effective search space: 865950
Effective search space used: 865950
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_l07.g1 MSMg01no304_l07.g1 CHROMAT_FILE:
MSMg01no304_l07.g1 PHD_FILE: MSMg01no304_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:42 2005
(763 letters)
>mm_chr9_110237440_110238596
Length = 1157
Score = 1319 bits (682), Expect = 0.0
Identities = 736/766 (96%), Gaps = 22/766 (2%)
Strand = Plus / Plus
Query: 7 tgcactttgctcactttgacagtctgtatccttccgttgactgcgaca---------tgt 57
|||||||||||||||||||||||||||||||||| |||| |||||||| |||
Sbjct: 198 tgcactttgctcactttgacagtctgtatccttctgttggctgcgacaaataccgcatgt 257
Query: 58 gtggttttcattctctctcccgtggaaccagtttccagggtcatccagtgtgtgcatgga 117
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtggttttcattctctttcccgtggaaccagtttccagggtcatccagtgtgtgcatgga 317
Query: 118 gaatcaggccttcaaactgtgtcttccggattctgccatacgagctcctgaccctggaac 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaatcaggccttcaaactgtgtcttccggattctgccatacgagctcctgaccctggaac 377
Query: 178 ttaccactgtcctgagttggctaaagaaacaagatctgggtgactttagccacctaaagt 237
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 378 ttaccactgttctgagttggctaaagaaacaagatccgggtgactttagccacctaaagt 437
Query: 238 gatccttgtgggtaatatttatggaatttttcaaggctctggctgttgggcacagtgtta 297
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 438 gatccttgtgggtaatatttgtggaatttttcaaggctctggctgttgggcacag----- 492
Query: 298 gcttatctaaagttccgtaatgaacagatgagatgatagtgttagtctatagggtgaatt 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 -cttatctaaagttccgtaatgaacagatgagatgatagtgttagtctatagggtgaatt 551
Query: 358 tcaggcaagttttctcactggccagttaggggctgtgcctgtatgcgaacttgtttgccc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tcaggcaagttttctcactggccagttaggggctgtgcctgtatgcgaacttgtttgccc 611
Query: 418 gacaacagtccgtgttttcctgcagatgtgcccactggcttcatagtctctctattgttc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gacaacagtccgtgttttcctgcagatgtgcccactggcttcatagtctctctattgttc 671
Query: 478 tcttagcaaatgggaggtggaagaggaggtggtatgagtggaggaagcagcctgtgtcca 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tcttagcaaatgggaggtggaagaggaggtggtatgagtggaggaagcagcctgtgtcca 731
Query: 538 agatggcacatctcagtacggcacggctctctttctctcctcttccccacttggcttgtt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 agatggcacatctcagtacggcacggctctctttctctcctcttccccacttggcttgtt 791
Query: 598 agacttttctaatttttaatttttttttaaatttgtggaaaataatatataaaataaaat 657
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 792 agacttttctaatttttaattttttttaaaatttgtggaaaataatatataaaataaaat 851
Query: 658 gttttaatacaattttaatgattaaatagagcagtcagggattattaaatatacttacag 717
|| ||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 852 gt------acaattttaatgattaaatagagtagtcagggat-attaaatatacttacag 904
Query: 718 tgttgtatagctgtcattattacccattttcagaacttcttaatta 763
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 tgttgtatagctgtcattattacccattttcagaacttcttaatta 950
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 763
Length of database: 1157
Length adjustment: 10
Effective length of query: 753
Effective length of database: 1147
Effective search space: 863691
Effective search space used: 863691
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
