TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGCTTTTCCAAGGACACTTATTTTATTTCCACGAAGAATTGCCC
TTAGCAAGCCAAGACCTGTGTTTGAGTGTGGTCATTGTTGCTTCAGACAC
CCTGCTAGGTAGAAATAGGATGTGCTTGCATGGGTACACGTTCATGCGTG
TGCATAAGGAAAATAATTTTCATGAAGATGCATGTTTATACCTGTTGTAC
CAGGGTGGTCTTTCTTTCTAGTCTTTCCGTTTCCATATTCGTAATGCCAT
TTAGATGGTGAGAAACCGAGAGCCTGCATTCTTAATGTACTCTCTAGGAT
CAGCATGGTTTTTTTTATCCTCTACCCCGCCTACAGCTATAAAACATTTC
AGGAGGCCATGAAGTGTAGCAGGCAGAACACAGGACCAGGGCCAACTACT
GGATTCTCACTTGGTATGTAACCTTGAACAACTGACTCAACATCTCTGAG
CCTTGTTCCTTGGTCTTAAAAATGCTTTCCCCACCTACCCCTGCAAGCTA
CCAGAGTGGCTGTGATGTTTAAATGAATACCGAACAGTTGCTCTGTACAG
CATGTGGCAGGTAGAACCAGTCAAATATGACCCCCCCCAAATATGCATCC
CCATGCTTCTTACCACAATGTGAAGTCATAATTATAAGACCTATCACCCC
ACTGAGGGGGAACAATAGAAAGCCCAACAAAAGTTA

TGGCGGCCGCCTGTTTTCCGACTGGAGGTGAACTATAGAATGTTACAAGG
ACTACCTTCGTCCAGCTAGAGCTCTGGCACATCAACAGAAAGCCAATGAG
GGCACAAGGGGTCTCTGAGCAGGAAAGCAAGGTCAGAATGCTGGGATGCT
CACAGACACAGAGATGGAATAACTATATACAACTTAGAGCCCTGGGATCT
TCTCAAGGGTTTTCTATGACCTTAGAAACTCTCTTGTCTTTCTTCTGTCC
CCTCTTTTTCATTTTGCTTCCTAAGGCTACAATATTGGAACTTAGAAACT
TTAAGTAATTTATTTCTGTAAAAATGTCTACGGATTTTTTTTTCTTTGTC
ACCCGATGGGTGCAATATATACTTAAAAACAACCTTTAGTTTAGTTGACT
GACTAGAGATGTTATTCATCGCAGTACGTTGGAAAGAAGTTGAATTCTAA
TTCTAATAAAATAGGGGTGGAATGTGTTTTCCCAGATGGGACATATTCCT
CTGATGATCAAGAAATGACTGTTTTGCTGATCCTAGTTAAAAATTTCAAT
ACGTATTTTACACATCTGTTGGCCCAGTTCTGGATCCATTCATTTATTTC
TCTGGAGTTATTGATGACTTAATAACTTGGTTATGAAAGGTCTTTTTTTT
ATTGAATAGAATAATTGAGTTAGTCCAATGCATGTTACTCTTGTGCAGTG
GGCAGCTTAAGATA

Query= MSMg01no306_f05.b1 MSMg01no306_f05.b1 CHROMAT_FILE:
MSMg01no306_f05.b1 PHD_FILE: MSMg01no306_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:04 2005
         (323 letters)



>mm_chr9_94988224_94988946
          Length = 723

 Score =  561 bits (290), Expect = e-164
 Identities = 311/318 (97%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattcactgcttttccaaggacacttattttatttccacgaagaattgcccttagcaagc 65
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 206 aattcactgcttttccaaggacacttattttatttgcacgaagaattgcccttagcaagc 265

                                                                       
Query: 66  caagacctgtgtttgagtgtggtcattgttgcttcagacaccctgctaggtagaaatagg 125
           ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 266 caagacctgtgtttgagtgtggttattgctgcttcagacaccctgctaggtagaaatagg 325

                                                                       
Query: 126 atgtgcttgcatgggtacacgttcatgcgtgtgcataaggaaaataattttcatgaagat 185
           |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 326 atgtgcttgcatgggtacacattcatgcatgtgcataaggaaaataattttcatgaagat 385

                                                                       
Query: 186 gcatgtttatacctgttgtaccagggtggtctttctttctagtctttccgtttccatatt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gcatgtttatacctgttgtaccagggtggtctttctttctagtctttccgtttccatatt 445

                                                                       
Query: 246 cgtaatgccatttagatggtgagaaaccgagagcctgcattcttaatgtactctctagga 305
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 446 cgtaatgccatttagatagtgagaaaccgagagcctgcattcttaatgtactctgtagga 505

                             
Query: 306 tcagcatggtttttttta 323
           ||||||||||||||||||
Sbjct: 506 tcagcatggtttttttta 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no306_f05.g1 MSMg01no306_f05.g1 CHROMAT_FILE:
MSMg01no306_f05.g1 PHD_FILE: MSMg01no306_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:04 2005
         (180 letters)



>mm_chr9_95034664_95035243
          Length = 580

 Score =  340 bits (176), Expect = 2e-98
 Identities = 179/180 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcaatatatacttaaaaacaacctttagtttagttgactgactagagatgttattcatc 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgcaatatatacttaaaaataacctttagtttagttgactgactagagatgttattcatc 321

                                                                       
Query: 61  gcagtacgttggaaagaagttgaattctaattctaataaaataggggtggaatgtgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcagtacgttggaaagaagttgaattctaattctaataaaataggggtggaatgtgtttt 261

                                                                       
Query: 121 cccagatgggacatattcctctgatgatcaagaaatgactgttttgctgatcctagttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cccagatgggacatattcctctgatgatcaagaaatgactgttttgctgatcctagttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)