Query= MSMg01no306_k23.b1 MSMg01no306_k23.b1 CHROMAT_FILE:
MSMg01no306_k23.b1 PHD_FILE: MSMg01no306_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:33 2005
(686 letters)
>mm_chr9_67975978_67977064
Length = 1087
Score = 1274 bits (659), Expect = 0.0
Identities = 677/683 (99%), Gaps = 1/683 (0%)
Strand = Plus / Plus
Query: 5 gaattctctagaggatcacaacagatagaaggtagagatgttataaaagaagacctattc 64
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctagaggaacagaacagatagaaggtagagatgttataaaagaagacctattc 264
Query: 65 ctttgacttacacagctcgggctggggagttctgctatggccacttgcccgcagagcagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttgacttacacagctcgggctggggagttctgctatggccacttgcccgcagagcagg 324
Query: 125 ctgtgaacccagtagcttctcagccatggggctggacacctcaacagtgttgttccagac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgtgaacccagtagcttctcagccatggggctggacacctcaacagtgttgttccagac 384
Query: 185 ctcaatggtgttccagacctcgaggacaccttgagaacttcttgtcttcagtctgtgttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcaatggtgttccagacctcgaggacaccttgagaacttcttgtcttcagtctgtgttg 444
Query: 245 ggaggctatcaaagctgggttctgatgtgagtcaaggatagacccacccaagagcaggac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaggctatcaaagctgggttctgatgtgagtcaaggatagacccacccaagagcaggac 504
Query: 305 aggaaggccagcaatgaaggagacagcacagaggagatcaatgaggaaacacttaataaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggaaggccagcaatgaaggagacagcacagaggagatcaatgaggaaacacttaataaa 564
Query: 365 gcactcattgctcctgacaccataactgcgtgtgctcattgcagaaattttgttaaaaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcactcattgctcctgacaccataactgcgtgtgctcattgcagaaattttgttaaaaat 624
Query: 425 gatgtgcacaggtttaatgaaaatcacagaatctcaccaattcagacagacatcactaac 484
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 625 gatgtgcacaggtttaatgaaaatcacagaatttcaccaattcagacaaacatcactaac 684
Query: 485 tttccttcccatctttcttctggatagatgtcttagattgcaattctcatagatttgtgt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttccttcccatctttcttctggatagatgtcttagattgcaattctcatagatttgtgt 744
Query: 545 tgtaacaattcacttgtaattgtaaggaatggctacaatatatccattggacttctcagc 604
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 745 tgtaacaattcacttgtaattgtaaggaatgactacaatatatccattggacttctcagc 804
Query: 605 cctacaaatcttacaactacggtttttattggctgcctaatattccttcctgtgagtaca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cctacaaatcttacaactacggtttttattggctgcctaatattccttcctgtgagtaca 864
Query: 665 -ccaacttcctgtattcaaatgt 686
||||||||||||||||||||||
Sbjct: 865 accaacttcctgtattcaaatgt 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1087
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1077
Effective search space: 728052
Effective search space used: 728052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_k23.g1 MSMg01no306_k23.g1 CHROMAT_FILE:
MSMg01no306_k23.g1 PHD_FILE: MSMg01no306_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:33 2005
(284 letters)
>mm_chr9_68134994_68135677
Length = 684
Score = 534 bits (276), Expect = e-156
Identities = 282/284 (99%)
Strand = Plus / Minus
Query: 1 aggtgggaaaggtaaagccaatgaccagtggggatggcaggaggttgggaagcctggagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aggtgggaaaggtaaagccaatgaccagtggggatggcaggaggttgggaagcctggagt 425
Query: 61 gagcaggtgggatgcccaggcctggaagcatagcaggagctcaaagcagggacatggcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gagcaggtgggatgcccaggcctggaagcatagcaggagctcaaagcagggacatggcaa 365
Query: 121 ggcataggaaactagaatagcaacagaagacatcgaatcccatcccaacaactctaagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggcataggaaactagaatagcaacagaagacatcgaatcccatcccaacaactctaagcc 305
Query: 181 atgggtttctctggcaaactggttacaaagacagtaaggatacaggtgcagtgcactcgg 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 304 atgggtttctctggcaaactggttccaaagacagtaaggatacaggtgcagtgcactcgg 245
Query: 241 taaggttgagacactgcttgggtcagggagctggtacaacttta 284
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 244 taaggttgagacactgcttgggtcaaggagctggtacaacttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
