Query= MSMg01no307_o18.b1 MSMg01no307_o18.b1 CHROMAT_FILE:
MSMg01no307_o18.b1 PHD_FILE: MSMg01no307_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:06 2005
(326 letters)
>mm_chr9_28082351_28083075
Length = 725
Score = 623 bits (322), Expect = 0.0
Identities = 325/326 (99%), Gaps = 1/326 (0%)
Strand = Plus / Plus
Query: 1 tcagaagatacaattagattttctctcaagaagctcccacatgtcacagtggagtttaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagaagatacaattagattttctctcaagaagctcccacatgtcacagtggagtttaag 260
Query: 61 ttctaagcgggtcacgtgactctgaccccccgtgactttgttcacttgctcatttttgga 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ttctaagcgggtcacgtgactctgaccccc-gtgactttgttcacttgctcatttttgga 319
Query: 121 gcaattattttgctcagagacacatgatgatgtcattgaatctagtcacatgctgtctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcaattattttgctcagagacacatgatgatgtcattgaatctagtcacatgctgtctct 379
Query: 181 aaagccagaacagatattgatgtagagattgtttttcataggaaatgtctgagtacaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaagccagaacagatattgatgtagagattgtttttcataggaaatgtctgagtacaaca 439
Query: 241 gaagagagactgatggacaagtaaagtagcagcccactgaaccataattcatcattggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaagagagactgatggacaagtaaagtagcagcccactgaaccataattcatcattggga 499
Query: 301 cttgtttgactctcttgcagctaatg 326
||||||||||||||||||||||||||
Sbjct: 500 cttgtttgactctcttgcagctaatg 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 725
Length adjustment: 9
Effective length of query: 317
Effective length of database: 716
Effective search space: 226972
Effective search space used: 226972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_o18.g1 MSMg01no307_o18.g1 CHROMAT_FILE:
MSMg01no307_o18.g1 PHD_FILE: MSMg01no307_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:06 2005
(279 letters)
>mm_chr9_28242905_28243583
Length = 679
Score = 516 bits (267), Expect = e-151
Identities = 276/279 (98%)
Strand = Plus / Minus
Query: 1 tgaggtaccttgtgttgactcctcccctttgcctctgctacagttcaccgggcatccttt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgaggcaccttgtgttgactcctcccctttgcctctgctacagttcaccgggcatccttt 420
Query: 61 tgactcattttccggtgttttccacgatgctattggcataacatcttatcagtggagtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgactcattttccggtgttttccacgatgctattggcataacatcttatcagtggagtta 360
Query: 121 attacatccacttggagtgtgaaggacaacttgattgtctcaaaaagccagaggccacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 attacatccacttggagtgtgaaggacaacttgattgtctcaaaaagccagaggccacat 300
Query: 181 aatccatctcactgcactctcaaaacaagttcccaattttctgttgcaggaggtgacagg 240
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 299 aatccatctcactgcattctcaaaacaggttcccaattttctgttgcaggaggtgacagg 240
Query: 241 gatggccctgggtaatgcgctggagctttgccctctgcc 279
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gatggccctgggtaatgcgctggagctttgccctctgcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
