BAC Information

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BAC

Clone NameMSMg01-307P07
Chromosome9 (Build37)
Map Location 38,024,714 - 38,210,735
singlet/doubletdoublet
Overlap geneOlfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147
Upstream gene1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893
Downstream geneOlfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307P07.T7 (MSMg01no307_p07.b1)MSMg01-307P07.TJ (MSMg01no307_p07.g1)
ACCAG432164AG432165
length756765
length of high quality
(start - end)
235 (123 - 357)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no307_p07.b1 PHD_FILE: MSMg01no307_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:08 2005CHROMAT_FILE: MSMg01no307_p07.g1 PHD_FILE: MSMg01no307_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(38,024,714 - 38,024,947)(38,210,448 - 38,210,735)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTCTGTATACCAAGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCT
TCCCAAGTGCTGTTTATTACAGGCGCAATTCATCATTGCCAGGCTGTTCT
TATTCTTAAACACCTTTCTCTACATGTTCAATGTCCTTCTGTTTAAAATA
ATCCCAATGAGACTATGTACTTCTGCACTTCATTTTCTGAGCCCAATTAC
TATGCCATACATATAAAGTATGCCATATTTGATATCTAGAGAAATATCTT
AGGCTATGGTTCATGTATGCATGGTCATGAAGAGGAGAACATGGCATGGG
ATGGTATATATTCTAAGATCTGCTTTGTCTCCACTACGCAAGACAACAGC
ATGGGAATAATTCACCCACTGCATGAGAAACTAGGCAAGAACAAATTTAT
TTTTCTGAGTAAGCATATAAACAGTATAAGGGCACTAACATATACTAGTA
TATTTTCATATATCTAGTAAACTTCTAAATATGGTATAAATTGTCTCAAA
ATATAATAGATTTCTTATTTTATGTATTTTATAATTATTTTTTTATGTAA
ATTGTACCTTCAAATTTCTGTATGTCAACCTAGAACTTTACTATTAGCCC
AGATTTCTCAATTTTTATCAATATTTATAGTTATTCATAAGAAAATACAG
ATGGACCAAAACAAGAATTAGCTTACTCTACAGTTTCATAGCTGGGAAGA
CAATTN
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCTCAGAGACAAAGTTAATCAGCA
TTTTGGGGCTGAAGACAGAAGAGTAACAGAGATCAATGAAGGAGAGGTTG
AAGAGGAAATAGTACATGGGGGTGTGCAGGTGAGGATTGAGGCCAATCAG
GATGATCAAGCCCAAGTTTCCCACCACTGTGATTATGTAGATTATTAGAA
ACAGGTAAAAGAGAGGCAGCTGGAGCTCTGGACGATCTGTCAAACCAGCA
AGGACAAATTCTGTCACAGAATATCCATTTCCAGCCAGCATGCTTATCAT
TGAAAATCTAGATTATTTGTTAATTCCCCTACTNGCCCCGGGCCATTTCC
ACAGTTTTACCATCAGNACACCCCANCACCATGAACAAATTTATGCTTTG
TCGTCTGAATATATTATCATATTCTCCCATTATGACAAATATCAGTTAGC
CCATGCTTATCCTTATAACCTGAATACTACAATAACATTCTTCTATCCTT
GCCTTCACCTATTGAGGTAGTGTGCCTGACATGCATGCCTATTCATTAAT
TAACTTATGTAGTGCGATGTGATTTACAGTTTCTTCAGTCTGGTCCTTCC
AATCACATTCTTTCATTGTATTAGACATCCTACTTCTTTTGTGATGTCCA
TATAGAGCGATTTTTGGCAGGATTCTGCCATACAGATATCCCGCATGTGT
GGTTTCCCTAGTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_p07.b1 MSMg01no307_p07.b1 CHROMAT_FILE:
MSMg01no307_p07.b1 PHD_FILE: MSMg01no307_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:08 2005
         (235 letters)



>mm_chr9_38024514_38025148
          Length = 635

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcgcaattcatcattgccaggctgttcttattcttaaacacctttctctacatgttcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcgcaattcatcattgccaggctgttcttattcttaaacacctttctctacatgttcaat 260

                                                                       
Query: 61  gtccttctgtttaaaataatcccaatgagactatgtacttctgcacttcattttctgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccttctgtttaaaataatcccaatgagactatgtacttctgcacttcattttctgagc 320

                                                                       
Query: 121 ccaattactatgccatacatataaagtatgccatatttgatatctagagaaatatcttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaattactatgccatacatataaagtatgccatatttgatatctagagaaatatcttag 380

                                                                 
Query: 181 gctatggttcatgtatgcatggtcatgaagaggagaacatggcatgggatggta 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctatggttcatgtatgcatggtcatgaagaggagaacatggcatgggatggta 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no307_p07.g1 MSMg01no307_p07.g1 CHROMAT_FILE:
MSMg01no307_p07.g1 PHD_FILE: MSMg01no307_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:08 2005
         (291 letters)



>mm_chr9_38210248_38210938
          Length = 691

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctcagagacaaagttaatcagcattttggggctgaagacagaagagtaacagagatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttctcagagacaaagttaatcagcattttggggctgaagacagaagagtaacagagatca 429

                                                                       
Query: 61  atgaaggagaggttgaagaggaaatagtacatgggggtgtgcaggtgaggattgaggcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atgaaggagaggttgaagaggaaatagtacatgggggtgtgcaggtgaggattgaggcca 369

                                                                       
Query: 121 atcaggatgatcaagcccaagtttcccaccactgtgattatgtagattattagaaacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atcaggatgatcaagcccaagtttcccaccactgtgattatgtagattattagaaacagg 309

                                                                       
Query: 181 taaaagagaggcagctggagctctggacgatctgtcaaaccagcaaggacaaattctgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 taaaagagaggcagctggagctctggacgatctgtcaaaccagcaaggacaaattctgtc 249

                                                           
Query: 241 acagaatatccatttccagccagcatgcttatcattgaaaatctagat 288
           |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 248 acagaagagccatttccagccagcatgcttatcattgaaaatctagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)